PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010098872.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | GATA | ||||||||
Protein Properties | Length: 174aa MW: 19601.4 Da PI: 10.5336 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 62.9 | 3.6e-20 | 40 | 73 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ C+ttkTplWR gp g+k+LCnaCG++yrkk XP_010098872.1 40 CVDCRTTKTPLWRGGPAGPKSLCNACGIRYRKKM 73 ********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.993 | 34 | 70 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.75E-14 | 34 | 78 | No hit | No description |
SMART | SM00401 | 2.0E-17 | 34 | 88 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 9.1E-17 | 37 | 73 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 6.82E-15 | 39 | 94 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 40 | 65 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 6.8E-18 | 40 | 73 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MSVAYRAFYA QYISLPLRFQ VFLGKESFGD VEANENKRSC VDCRTTKTPL WRGGPAGPKS 60 LCNACGIRYR KKMVSVMRMS TGSSSERIKR DRTHTHSNTS NSTTLTNDTN TSVGKDKDFN 120 ETLKVKLDDF GKEVLSQKSR PVVKKQRCRR KRKLSEEEQA AVLLMSLSCG SVFA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010098872.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024023019.1 | 1e-108 | GATA transcription factor 16 | ||||
TrEMBL | W9RGM3 | 1e-126 | W9RGM3_9ROSA; GATA transcription factor 16 | ||||
STRING | XP_010098872.1 | 1e-127 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1569 | 32 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 5e-27 | GATA transcription factor 16 |
Link Out ? help Back to Top | |
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Entrez Gene | 21386444 |