PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010098569.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

NF-YA

Protein Properties

Length: 330aa MW: 36116.6 Da PI: 6.963

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010098569.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	101.7	6.9e-32	165	221	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+e+k ksrkpylheSRh hAlrR+Rg+gGrF XP_010098569.1 165 EEPVFVNAKQYHGILRRRQSRAKAESENKA-LKSRKPYLHESRHLHALRRARGCGGRF 221 69*************************9.9***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.5E-35	163	224	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.292	164	224	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	6.4E-27	166	221	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.3E-23	167	189	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	169	189	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	4.3E-23	198	221	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MGAHLKFVDE IIPSIWFEDS ARGGLMTSSV HDLSGIGPGL DVGGGGGGGC HESYGGSVYI 60 RDNCETDEQQ KHSESQLESS SPAAGISHAV ITTPNVQYAT PPQFGAGHAV APAAYPYPDP 120 YYRSIFAPYD AQPYPPQPYG GQPMVHLQLM GIQQAGVPLP SDAVEEPVFV NAKQYHGILR 180 RRQSRAKAES ENKALKSRKP YLHESRHLHA LRRARGCGGR FLNSKKNEKQ QDEVASGDKS 240 QPNINLNLDK NERAPADERG TFRERRKKTQ TTNKAKQGPY PLMNESGGSL GEESLPLDSS 300 SSKNNNNNNN NNNNNNNKNT AEEEEDQHQQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-19	164	228	1	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010098569.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024022777.1	1e-144	nuclear transcription factor Y subunit A-7
Refseq	XP_024022778.1	1e-144	nuclear transcription factor Y subunit A-7
Refseq	XP_024022779.1	1e-144	nuclear transcription factor Y subunit A-7
Swissprot	Q84JP1	5e-68	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	W9RFT3	0.0	W9RFT3_9ROSA; Nuclear transcription factor Y subunit A-7
STRING	XP_010098569.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5379	33	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	5e-52	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Entrez Gene	21408684

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]