PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010098492.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family LSD
Protein Properties Length: 189aa    MW: 20183.4 Da    PI: 8.7763
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010098492.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD139.68.8e-13731125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    C+gCr +L YPrGA++V+CalC+ V
  XP_010098492.1  7 CSGCRSILLYPRGATNVCCALCNSV 31
                    ***********************98 PP

2zf-LSD149.56.8e-164670125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    CggCrtlL+Y+rGA+sVRC++C+tV
  XP_010098492.1 46 CGGCRTLLMYTRGATSVRCSCCHTV 70
                    ************************9 PP

3zf-LSD149.19.4e-1684108125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+Crt+L+YP+GApsV+Ca+C+ V
  XP_010098492.1  84 CGNCRTTLMYPYGAPSVKCAICQYV 108
                     ***********************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010536.2E-12434IPR005735Zinc finger, LSD1-type
PfamPF069438.9E-11731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.1E-174372IPR005735Zinc finger, LSD1-type
PfamPF069432.9E-134670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.9E-1381111IPR005735Zinc finger, LSD1-type
PfamPF069431.7E-1484108IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MQSQLVCSGC RSILLYPRGA TNVCCALCNS VTSVPPPGME MAQLICGGCR TLLMYTRGAT  60
SVRCSCCHTV NLAPGPNQVA HVNCGNCRTT LMYPYGAPSV KCAICQYVTN VMGNMRVPIP  120
VHRPNGTNST MPSTSAPMPH SQSQTVVVEN PMSVDESGKL AGPGWFGSEK KVGLARPRSF  180
MDRGRAWPN
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010098492.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024022803.11e-113protein LSD1
RefseqXP_024022804.11e-113protein LSD1
RefseqXP_024022805.11e-113protein LSD1
SwissprotQ2QMB35e-69LOL2_ORYSJ; Protein LOL2
TrEMBLW9R7M31e-135W9R7M3_9ROSA; Uncharacterized protein
STRINGXP_010098492.11e-136(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40273361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.75e-66LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wu J, et al.
    OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
    Plant J., 2014. 80(6): p. 1118-30
    [PMID:25353370]