PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010098492.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | LSD | ||||||||
Protein Properties | Length: 189aa MW: 20183.4 Da PI: 8.7763 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 39.6 | 8.8e-13 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGA++V+CalC+ V XP_010098492.1 7 CSGCRSILLYPRGATNVCCALCNSV 31 ***********************98 PP | |||||||
2 | zf-LSD1 | 49.5 | 6.8e-16 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rGA+sVRC++C+tV XP_010098492.1 46 CGGCRTLLMYTRGATSVRCSCCHTV 70 ************************9 PP | |||||||
3 | zf-LSD1 | 49.1 | 9.4e-16 | 84 | 108 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C+ V XP_010098492.1 84 CGNCRTTLMYPYGAPSVKCAICQYV 108 ***********************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 6.2E-12 | 4 | 34 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 8.9E-11 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.1E-17 | 43 | 72 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.9E-13 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.9E-13 | 81 | 111 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.7E-14 | 84 | 108 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000303 | Biological Process | response to superoxide | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0002240 | Biological Process | response to molecule of oomycetes origin | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process | ||||
GO:0010618 | Biological Process | aerenchyma formation | ||||
GO:0043069 | Biological Process | negative regulation of programmed cell death |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MQSQLVCSGC RSILLYPRGA TNVCCALCNS VTSVPPPGME MAQLICGGCR TLLMYTRGAT 60 SVRCSCCHTV NLAPGPNQVA HVNCGNCRTT LMYPYGAPSV KCAICQYVTN VMGNMRVPIP 120 VHRPNGTNST MPSTSAPMPH SQSQTVVVEN PMSVDESGKL AGPGWFGSEK KVGLARPRSF 180 MDRGRAWPN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010098492.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024022803.1 | 1e-113 | protein LSD1 | ||||
Refseq | XP_024022804.1 | 1e-113 | protein LSD1 | ||||
Refseq | XP_024022805.1 | 1e-113 | protein LSD1 | ||||
Swissprot | Q2QMB3 | 5e-69 | LOL2_ORYSJ; Protein LOL2 | ||||
TrEMBL | W9R7M3 | 1e-135 | W9R7M3_9ROSA; Uncharacterized protein | ||||
STRING | XP_010098492.1 | 1e-136 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4027 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 5e-66 | LSD family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21408607 |
Publications ? help Back to Top | |||
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