PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010098455.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | HB-other | ||||||||
Protein Properties | Length: 375aa MW: 41263.6 Da PI: 7.5335 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.3 | 2.3e-07 | 13 | 74 | 6 | 55 |
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55 +ft++++ e+e+ ++ n p +e +LA+k ++ +qV +WFqNrR+ XP_010098455.1 13 RFTASEVAEMEAILQEhnNTMPAREILVDLADKFsesverkgkiMVQMKQVWNWFQNRRYAI 74 699999********9665889999999***************999**************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.11E-10 | 4 | 76 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 0.001 | 7 | 81 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 9.912 | 13 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.35E-5 | 13 | 75 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-7 | 13 | 77 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 6.6E-5 | 13 | 74 | IPR001356 | Homeobox domain |
Pfam | PF16719 | 3.6E-40 | 125 | 251 | IPR032001 | SAWADEE domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MGRPPGNGGP AFRFTASEVA EMEAILQEHN NTMPAREILV DLADKFSESV ERKGKIMVQM 60 KQVWNWFQNR RYAIRAKLSR NLGMLSVSSM PRDDPTPVRN VPQAITAPIP APSGTGRGAS 120 ENSIMEFEAK SGRDGAWYDV ANFFSHRYLE SGDPEVLVRF VGFGPEDDEW VNIRKHVRQR 180 SLPCESSECV AVLPGDLILC FQEGKEQALY FDAHVLDAQR RRHDVRGCRC RFLVRYDHDQ 240 SEEIVPLRKV CRRPETDYRL QQLYAVNEAA SAEQQKSSTD NFGGGGFRAR ISAETTPKLQ 300 HADAALVAPA LHATAALATK ASILEPKKVE IVNVVVDAGN SNNVTASGNG IMSGSPASNK 360 PIVSGEKMPE GKAVG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4iuq_A | 6e-45 | 125 | 255 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_B | 6e-45 | 125 | 255 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iur_A | 6e-45 | 125 | 255 | 4 | 134 | SHH1 SAWADEE |
4iur_B | 6e-45 | 125 | 255 | 4 | 134 | SHH1 SAWADEE |
4iut_A | 6e-45 | 125 | 255 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iut_B | 6e-45 | 125 | 255 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_A | 6e-45 | 125 | 255 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_B | 6e-45 | 125 | 255 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_A | 6e-45 | 125 | 255 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_B | 6e-45 | 125 | 255 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010098455.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024022731.1 | 0.0 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
Swissprot | Q8RWJ7 | 1e-145 | SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
TrEMBL | W9RI10 | 0.0 | W9RI10_9ROSA; Uncharacterized protein | ||||
STRING | XP_010098455.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6816 | 31 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.1 | 1e-132 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
Link Out ? help Back to Top | |
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Entrez Gene | 21395399 |