PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010098128.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GATA
Protein Properties Length: 332aa    MW: 35988.6 Da    PI: 6.5102
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010098128.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.76.7e-18227261135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  XP_010098128.1 227 CFHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRL 261
                     *******************************9885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.3E-8318313IPR016679Transcription factor, GATA, plant
SMARTSM004011.4E-17221271IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.334221257IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-15222284No hitNo description
Gene3DG3DSA:3.30.50.101.3E-14222258IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.26E-14226273No hitNo description
PROSITE patternPS003440227252IPR000679Zinc finger, GATA-type
PfamPF003201.2E-15227261IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEVPEFFVGG YFGAGAGDFA TEKRHSEQKP GEHFAIDDLL DFSNDDAMVT DGFFDNVAGK  60
STDSTVTAVE SCNSSVSGGE QQFSGNRSFS EFSGDLCVPY DDLAELEWLS NFVDESFSAG  120
KDFQPLQFLS GSSAAATAGK PLTPETSSSS ETVTTDTARN AAFFQHETPL PGKARSKRSR  180
AAPGDWTTRL LHLVTPDGGE AKPVKTTPSK KEGSNSNAGS DSSGRKCFHC AAEKTPQWRT  240
GPMGPKTLCN ACGVRYKSGR LVPEYRPAAS PTFMSAKHSN SHRKVLELRR QKELQKTQQH  300
QFLSQSSVFG VSNGGDDFLI HYRSGPDFRH LI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010098128.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010098128.10.0GATA transcription factor 9
SwissprotO826326e-87GATA9_ARATH; GATA transcription factor 9
TrEMBLW9RGZ70.0W9RGZ7_9ROSA; GATA transcription factor
STRINGXP_010098128.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.17e-83GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]