PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010098101.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

bHLH

Protein Properties

Length: 298aa MW: 32613.2 Da PI: 6.8354

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010098101.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.1	0.00036	211	249	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq XP_010098101.1 211 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 249 6677889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.439	199	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.91E-6	209	253	No hit	No description
SuperFamily	SSF47459	5.37E-10	209	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-8	213	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MHPPSSTLFP PQFHVLANGS SSVIPLNSSP DHHHVEDPPQ SWSQSGNYTG LSGDQEDKLF 60 GQNHFQPKKM EDWEDQMMSN NTTVNPPPRL IPLHNIADDH VKAVNSQKRN NLYGQADHEE 120 IILQQANNIR SFINCGWSQI VPAVSSSPRS CVTSSVGSTT NNNMLDFSYN KSQTTGHHSA 180 SSECNSTVTG GAVCKKARVQ SSSSQPPLKV RKEKLGDRIT ALHQLVSPFG KTDTASVLLE 240 AIGYIRFLQS QIEDMEGQEK LKDLRSKGLC LVPVSCTQHV GSDNGADYWA PANYGSGF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010098101.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT093872	1e-42	BT093872.1 Soybean clone JCVI-FLGm-24O24 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024022535.1	0.0	transcription factor bHLH68
Swissprot	Q8S3D1	3e-43	BH068_ARATH; Transcription factor bHLH68
TrEMBL	W9RUY0	0.0	W9RUY0_9ROSA; Uncharacterized protein
STRING	XP_010098101.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1223	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	2e-45	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	21408898

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]