PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010097899.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family TALE
Protein Properties Length: 970aa    MW: 104504 Da    PI: 7.0807
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010097899.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.13.6e-096847211954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  XP_010097899.1 684 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 721
                     664459******************************88 PP
2BELL93.52e-305616151872
            BELL  18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     +Vd+rY++y+eq+q+v++sF+ v+g g+a pYt+lA+ka+SrhFrcLkdai+ q+
  XP_010097899.1 561 KVDRRYNHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAITAQL 615
                     7***************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-69476613IPR006563POX domain
PfamPF075267.8E-42481612IPR006563POX domain
PROSITE profilePS5007112.568662725IPR001356Homeobox domain
CDDcd000864.42E-13665726No hitNo description
SMARTSM003891.2E-9665729IPR001356Homeobox domain
SuperFamilySSF466895.13E-17667732IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-28668731IPR009057Homeodomain-like
PfamPF059205.1E-18682721IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 970 aa     Download sequence    Send to blast
MKVEPSHKEA SSVVKEVARV KECNKMRTIE DDKDKMVKTY TSENTLKKKK TVPRVKFDLM  60
RVLTGYMFIL VEICIVGVMT GFEIEYPNKQ GEKGDDDGDD DDQEDKELDM GIATPPLPQI  120
FSANSKIHHS ISSNSPNNSM SQQDYHQAAN IFSTFSNGFE RSAVTAAAAA AHHDHHNHHQ  180
HHIAQQIRRE KLRVQGFDAP HPGPPLVGID EDVESGALPV YETAGMLSEM FNFPHGGSSA  240
TELLEQQQMR PPQPPPPGNE WYGGGRHHQS GGRDSSIASH HQQHQHHPHH HHQISGINAD  300
SAAAMQLFLM NPPPRSPSPP AAAAATSSNT LHMLLPNPSP NSLQPFTHHS STNSAGGGGP  360
FGQFTWVPEG GGGGAAAAAA GPPADISGGV VESQSLSLSL NSSLQPLEAA KAEEFRNIAG  420
NAGMLYYGTP TAHGGSNSAE QYAYKSFGIG HGGGGVVTAP NHHHHHQLHV GYGSSLGVVN  480
VLRNSKYVKA AQELLEEFCS VGRGHFKKNK FGRNNSNNNN ANPSSSGGGG GGGGGGSSSS  540
SKDVVVPPLS AADRIEHQRR KVDRRYNHYC EQMQMVVNSF DLVMGFGAAV PYTALAQKAM  600
SRHFRCLKDA ITAQLKHSCE LLGEKDGVGS SGITKGETPR LKLLEQSLRQ QRAFQSIGMM  660
EQEAWRPQRG LPERSVNILR AWLFEHFLHP YPSDADKHLL ARQTGLSRNQ VSNWFINARV  720
RLWKPMVEEM YQQETKEEDT SEDNITNNNN NNNNNNNNQE IRSENNNNNN VIIRNNQNNS  780
GQHQQQQQQQ QAATALAQTP TPNAAGSTPG TASSSAPTAA ISSAPATTTT PTGKRSDFNA  840
LENDPSVVAI NRQLPFSENQ AIRLVHHHHH HHMIPTTISS PSDLVAPPVI DDTCQFGTTP  900
GNNHNNANVT VAPDSGGIGS ALIGFGTTTA GGGGSGSGDV SLTLGLRHPG NMPEKTPTTT  960
ASFSVRDFGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-16671728158Homeobox protein Meis1
4xrs_B1e-16671728158Homeobox protein Meis1
5bng_A1e-16671729159Homeobox protein Meis2
5bng_B1e-16671729159Homeobox protein Meis2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1525536SGGGGGGGGGGS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010097899.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024022353.10.0BEL1-like homeodomain protein 4
SwissprotQ9SW801e-154BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLW9R5M20.0W9R5M2_9ROSA; BEL1-like homeodomain protein 2
STRINGXP_010097899.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35243257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-133BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]