PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010097842.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | TCP | ||||||||
Protein Properties | Length: 393aa MW: 44998.1 Da PI: 4.4985 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 120.4 | 2.2e-37 | 28 | 161 | 2 | 130 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssaseceae 76 ++kkdrhski+T++g+RdRRvRls+++a++fFdL d+LGfdk+skt+eWLl+++k+aikel ++ s XP_010097842.1 28 PTKKDRHSKIYTAQGLRDRRVRLSIDIAREFFDLHDMLGFDKASKTLEWLLTKSKKAIKELSRSklrthdhhghvmtkstallsS---------- 112 68**************************************************************776554444444333333321.......... PP TCP 77 sssssasnsssg...kaaksaakskksqksaasalnlakesrakarararertrekm 130 +++s + ++ +++++ ++++k+++ +nl +e+ +++ ++++e+++e+ XP_010097842.1 113 ------AANSDQcefNEVAAEHNVSPEDKDDH--NNLEEEEEEEEEEEEEEEEEEEE 161 ......11122233323333333333333333..33333222222222111111111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.2E-38 | 29 | 179 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 35.681 | 30 | 88 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.909 | 217 | 234 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MTSTTTTTTT KQDVIFTDPN NFGLPKKPTK KDRHSKIYTA QGLRDRRVRL SIDIAREFFD 60 LHDMLGFDKA SKTLEWLLTK SKKAIKELSR SKLRTHDHHG HVMTKSTALL SSAANSDQCE 120 FNEVAAEHNV SPEDKDDHNN LEEEEEEEEE EEEEEEEEEE EEEEEEEEEE EEEEEEEEEE 180 EEEEEDGVLL APKRKCLEEK IDMETLSESA LMSLLAKEAR AKARARARAR TKEKKHNYCT 240 SSYNSNKIRS NYNMGKCAGW SSQISNQLFR TVTSHLDQDQ TLRSPNLVGE ISQEKEAGLF 300 RMRSNARKDD DDDDQEEPSV VMIKRNKLKF PLISSGTYDH HQGQFCGISK GESSNSAMIY 360 SSPSLLLTQN WDNNNSNNIS TASPHSSSFC LPT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 9e-14 | 35 | 88 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 9e-14 | 35 | 88 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 219 | 228 | RAKARARARA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00215 | DAP | Transfer from AT1G67260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010097842.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | W9R5H5 | 0.0 | W9R5H5_9ROSA; Uncharacterized protein | ||||
STRING | XP_010097842.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 2e-29 | TCP family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21392493 |