PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010097452.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GRAS
Protein Properties Length: 474aa    MW: 53282.2 Da    PI: 5.9259
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010097452.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS461.84.1e-141494701373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl+cA++v+sg+le+a+ +L+++s+laspdgd+mqR+aayfteALa r+++++++l kal++++ s   +see+ ++k+f+e++P+lk+++
  XP_010097452.1  49 LIHLLLTCANHVASGSLENANLALEQISQLASPDGDTMQRIAAYFTEALADRILKNWPGLHKALNSTRIS--LVSEEILVRKVFFELFPFLKVAF 141
                     689*************************************************************999987..7********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +++NqaI ea+ege++vHiiD+  ++++QW+aLlq L++Rpegpp+lRiT+v++    ++e l ++++rL + Ae+l++pf+fn+ ++++le+l+
  XP_010097452.1 142 VLTNQAITEAIEGEKMVHIIDLHSTEPAQWVALLQVLNARPEGPPHLRITAVHQ----QNEVLDHMAHRLIEEAEKLDIPFQFNP-IVSKLENLD 231
                     ******************************************************....9**************************.7999***** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll............................................................desvsleserd 225
                     +e+Lrvk+gEal+V++vlqlh+ll                                                              sv    + d
  XP_010097452.1 232 MEKLRVKTGEALVVSSVLQLHTLLafddellrkrsllasknlngthfsrvlqmnqstlaellekdlvngyspspdsasssplspTTSV----KMD 322
                     ****************************************************************************987764222222....468 PP

            GRAS 226 evLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle 320
                     ++L+ +++lsPk++v++eq+++hn+++++er+leal+ y+alfd+le++++r+  er kvE++l+g+ei+n++acegaer+erhe+l kW +rl+
  XP_010097452.1 323 NFLNGLWGLSPKLMVITEQDSNHNGSTLMERLLEALYSYAALFDCLESTVSRTPLERLKVEKMLFGEEIKNIIACEGAERKERHEKLDKWIQRLD 417
                     8********************************************************************************************** PP

            GRAS 321 eaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +aGF+++pls++ + qa++ll+ ++ dgy++ ee+g ++++W+drpL+svSaW
  XP_010097452.1 418 SAGFSNLPLSYFGMLQARRLLQGYGCDGYKIREENGNVLICWQDRPLYSVSAW 470
                     ***************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.01623451IPR005202Transcription factor GRAS
PfamPF035141.4E-13849470IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MAPMFQDEGS SSVTSSPLQF FSMTSLSPSL GSPYPWLKEL KSEERGLYLI HLLLTCANHV  60
ASGSLENANL ALEQISQLAS PDGDTMQRIA AYFTEALADR ILKNWPGLHK ALNSTRISLV  120
SEEILVRKVF FELFPFLKVA FVLTNQAITE AIEGEKMVHI IDLHSTEPAQ WVALLQVLNA  180
RPEGPPHLRI TAVHQQNEVL DHMAHRLIEE AEKLDIPFQF NPIVSKLENL DMEKLRVKTG  240
EALVVSSVLQ LHTLLAFDDE LLRKRSLLAS KNLNGTHFSR VLQMNQSTLA ELLEKDLVNG  300
YSPSPDSASS SPLSPTTSVK MDNFLNGLWG LSPKLMVITE QDSNHNGSTL MERLLEALYS  360
YAALFDCLES TVSRTPLERL KVEKMLFGEE IKNIIACEGA ERKERHEKLD KWIQRLDSAG  420
FSNLPLSYFG MLQARRLLQG YGCDGYKIRE ENGNVLICWQ DRPLYSVSAW GCRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-41494704374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010097452.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024022054.10.0scarecrow-like protein 3 isoform X1
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLW9R4S10.0W9R4S1_9ROSA; Uncharacterized protein
STRINGXP_010097452.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]