PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010097275.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GRAS
Protein Properties Length: 546aa    MW: 60806 Da    PI: 5.4906
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010097275.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS423.51.7e-1291775462374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     + lL  cA+++ ++d   +++l+++l+ ++s +gdp+qRl ay++e+L a+la s+s++yk+l+++e +    +e +++++l++e++P++kf+++
  XP_010097275.1 177 RGLLCICAKVLGDNDILTTEWLISELRLMVSVSGDPVQRLGAYMVEGLVAKLACSGSSIYKSLRCKEPA---GAELFSYMHLLYEICPCIKFGYM 268
                     678999**************************************************************9...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN aI ea++ e+ vHiiDf+i qG+QW+ L++aLa+Rp+gpp++RiTg+++++s   +   le +g rL+++Ae+++vpfef++ v++r +++
  XP_010097275.1 269 SANGAIAEAMKDESVVHIIDFQIVQGTQWMILIHALATRPGGPPKIRITGIDDSTSAyaRGGGLEVVGMRLSRIAEACKVPFEFHA-VETRATEV 362
                     *****************************************************998899999************************.799***** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     +le+L v+pgEa aVn++l+lh+++desvs++++rd++++l kslsPkvv++veqea++n+++F  rf+e+l+yy a+f++++++lpr+++eri+
  XP_010097275.1 363 QLEDLGVRPGEASAVNFALMLHHMPDESVSSQNHRDRLIRLAKSLSPKVVTLVEQEANTNTAPFYPRFVETLNYYLACFETIDVTLPRDNKERIN 457
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     vE+++l+r+ivn++aceg er+erhe l+kWr+r+++aGF+p pls  +++++++llr+++++ +++ee++g+l+lgW d++L++ +aWr
  XP_010097275.1 458 VEQHCLARDIVNLIACEGLERVERHELLGKWRSRFTMAGFRPHPLSPLVNATIRALLRNYNDK-FTLEERDGALYLGWIDKALIASCAWR 546
                     *************************************************************55.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.646150527IPR005202Transcription factor GRAS
PfamPF035145.9E-127177546IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MKESQSYRIS NGTLRFCEQQ VKEPEACCWP PTQKSNDLTG SAKGNQEAHL SSKVFEQYCT  60
LESSSGTGTH PGQNSSSSVS FSPSGSPSSQ PETQSYPIDQ NHSPDNACVS PFNHSCLTDD  120
ADDLRHKIRE LETAMLGIDS DIPDMYNMYN QVEYKESSLD GESWKQITEM ISRGDLRGLL  180
CICAKVLGDN DILTTEWLIS ELRLMVSVSG DPVQRLGAYM VEGLVAKLAC SGSSIYKSLR  240
CKEPAGAELF SYMHLLYEIC PCIKFGYMSA NGAIAEAMKD ESVVHIIDFQ IVQGTQWMIL  300
IHALATRPGG PPKIRITGID DSTSAYARGG GLEVVGMRLS RIAEACKVPF EFHAVETRAT  360
EVQLEDLGVR PGEASAVNFA LMLHHMPDES VSSQNHRDRL IRLAKSLSPK VVTLVEQEAN  420
TNTAPFYPRF VETLNYYLAC FETIDVTLPR DNKERINVEQ HCLARDIVNL IACEGLERVE  480
RHELLGKWRS RFTMAGFRPH PLSPLVNATI RALLRNYNDK FTLEERDGAL YLGWIDKALI  540
ASCAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-611765465375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010097275.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010097275.10.0scarecrow-like protein 21
RefseqXP_024021934.10.0scarecrow-like protein 21
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLW9R3X90.0W9R3X9_9ROSA; Uncharacterized protein
STRINGXP_010097275.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]