PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010097066.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GATA
Protein Properties Length: 333aa    MW: 36889.1 Da    PI: 9.0762
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010097066.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.44.8e-19177210134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk +
  XP_010097066.1 177 CSDCNTTSTPLWRSGPRGPKSLCNACGIRQRKAR 210
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577167.13E-13170210No hitNo description
PROSITE profilePS5011413.178171207IPR000679Zinc finger, GATA-type
SMARTSM004011.6E-18171222IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-15175210IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.61E-12176206No hitNo description
PROSITE patternPS003440177202IPR000679Zinc finger, GATA-type
PfamPF003201.0E-16177210IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MTSVFLNPPH SSFSDLVEQK EDQKLKLFIN SQYNEASSSL SSPTAYNFFN SSTQDQRGGC  60
EVIGSQQRDQ KAVIDIFSIS TSQNLHICQR DREDNIGDPD HEYNNKSMNN NGSVKYWMSS  120
KMRLMEKMSN PETCATSTDD KGEKTAHKVL QYSPRQDNSG QAKFNLSQSN RTTVRVCSDC  180
NTTSTPLWRS GPRGPKSLCN ACGIRQRKAR RAMAEAAAAA NGLVVAADST STAAPNYTPT  240
KGSAASTSYY KTTQYHINKE KKSRGNHISH YKNKLKLKLL ETKNDNINDK HCLNKFSFGL  300
NVDNCSAFSG VFPKDVAEAA VLLMELSCGF VHS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010097066.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010097066.10.0putative GATA transcription factor 22
TrEMBLW9RRY80.0W9RRY8_9ROSA; Putative GATA transcription factor 22
STRINGXP_010097066.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.16e-20cytokinin-responsive gata factor 1