PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010096853.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | C2H2 | ||||||||
Protein Properties | Length: 266aa MW: 29205 Da PI: 4.6393 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.9 | 0.00016 | 239 | 262 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C++sF + L++H + H XP_010096853.1 239 FQCKSCNRSFGSDIALQSHTKAkH 262 89*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.60.120.340 | 7.5E-4 | 3 | 73 | IPR024057 | Nucleoplasmin core domain |
PROSITE profile | PS50157 | 11.281 | 239 | 266 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 241 | 262 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MEFWGVEVKS GESFVVQEEY ETILHLSLAC LGEVKKDKGS EPVHLFAKVD DKKFVIGILS 60 SEKFPQISFD LVFEKDFELS HNWKNGNEYS DSEDEIAPVP IELGQSSLQA KPEEKNVDVN 120 KDVKSDQKAQ VKSEEESSDD DDESEDEDDS EDEETDGSEE EEENKVDISK KRPAEASKKT 180 SGGDKKAKFQ TPEKAVAKTS GNKVGGHTAT PHPAKQAGKT AAKNEQQPKQ QAPKAGGAFQ 240 CKSCNRSFGS DIALQSHTKA KHATAK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010096853.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024021650.1 | 1e-163 | histone deacetylase HDT1 | ||||
TrEMBL | W9RRE3 | 0.0 | W9RRE3_9ROSA; Histone deacetylase HDT1 | ||||
STRING | XP_010096853.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1025 | 30 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44750.2 | 7e-25 | histone deacetylase 3 |
Link Out ? help Back to Top | |
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Entrez Gene | 21387093 |