PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010096822.1
Common NameDREB6C
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family ERF
Protein Properties Length: 320aa    MW: 35172.6 Da    PI: 8.953
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010096822.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.7e-19122172256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  XP_010096822.1 122 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 172
                     59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.65E-17121181No hitNo description
PROSITE profilePS5103223.301122179IPR001471AP2/ERF domain
SMARTSM003801.1E-36122185IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-31122180IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-22122179IPR016177DNA-binding domain
PfamPF008473.2E-13123172IPR001471AP2/ERF domain
PRINTSPR003674.0E-10123134IPR001471AP2/ERF domain
PRINTSPR003674.0E-10145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MDRIHDTHFP LQFSKGLDIR SSLSNLILTG GTTTTLDSIF SHCVPSCSTT TKNDNNNPVL  60
EPLGSSVYLQ QRDLLQKFSS ENMTTYDFSR FSMTNPVQDS VSVSTTARSM AFSASVPYRK  120
KLYRGVRQRH WGKWVAEIRL PQNRMRVWLG TYDTAEAAAY AYDRAAYKLR GEYARLNFPN  180
LKDPSVLGFG DWTKLNALKS SVDAKIQAIC QKVKRNKAKK NAKKSEAVGD GKGSGGCKAE  240
NVVNSSSTSS SSAFSPLVLG PEMVSPTVSE DGFWRSENSP CSVSNECPMA AVAEDSGFEG  300
SSLARIPSFD PDLIWEVLAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-20121179160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010096822.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6783830.0KF678383.1 Morus notabilis dehydration responsive element binding transcription factor (DREB6C) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010096822.10.0ethylene-responsive transcription factor ERF061
RefseqXP_010113146.10.0ethylene-responsive transcription factor ERF061
SwissprotQ9C7W24e-73ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLW6FTE90.0W6FTE9_9ROSA; Dehydration responsive element binding transcription factor
STRINGXP_010096822.10.0(Morus notabilis)
STRINGXP_010113146.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71813148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.18e-56ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]