PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010096790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | TCP | ||||||||
Protein Properties | Length: 282aa MW: 28793.2 Da PI: 10.468 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 121.8 | 7.7e-38 | 52 | 135 | 3 | 87 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsss 87 +kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++ +s s+ +++ ss XP_010096790.1 52 VKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFST-VSVSVRGGARSS 135 79*****************************************************************97773.333333332222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 28.209 | 57 | 111 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.1E-32 | 57 | 134 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MSNSDVGASN GVNNGAIIEV QQGQQPMALA TVNNGTNGGK KGDGGNNGAL VVKKPPSKDR 60 HSKVDGRGRR IRMPIICAAR VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTTPAS 120 FSTVSVSVRG GARSSLAAST TSSSVSLEHK PLLGPTPFIL GKRLRPDEGG VKDGSDGNDG 180 VSVVGGTAMG SMVGSAAPAG GFWAPHFGQV WSFAAAAAPP EMVAQPSVSQ HQHAATSLFV 240 QQQAMGEASA ARLGNYLPGH LNLLASLSGG PGSSGRREDD PR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00524 | DAP | Transfer from AT5G23280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010096790.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010096790.1 | 0.0 | transcription factor TCP7 | ||||
Swissprot | Q9FMX2 | 2e-86 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | W9RD94 | 0.0 | W9RD94_9ROSA; Uncharacterized protein | ||||
STRING | XP_010096790.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5469 | 31 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 6e-54 | TCP family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21388262 |