PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010096585.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

GRAS

Protein Properties

Length: 685aa MW: 77208 Da PI: 5.3925

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010096585.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	391.2	1.1e-119	312	682	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL+ cA+ v+++d + a++lL+++++++sp+gd mqRla++f+ +L+ar+a+s++++ykal +++ts +++l+a++l+ ++P+ k+s+ XP_010096585.1 312 LRTLLTLCAHSVAADDRRSAEKLLKQIRQHSSPTGDGMQRLAQCFADGLEARMAGSGTQVYKALIAKPTS---AADVLKAYHLLLAACPFKKLSN 403 5789**************************************************************99...9***************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 + N++I++ +e+++r+HiiDf+i +G+QWp+L+q L+sR+egpp+lRiTg++ p++g +e++eetg+rLa++Ae+++vpfefn+ +a+++++ XP_010096585.1 404 FFSNKTIMNVAEKATRLHIIDFGILYGFQWPCLIQRLSSRSEGPPKLRITGIDFPQPGfrPAERVEETGRRLANYAETFKVPFEFNA-IAQKWDT 497 *****************************************************9*************************.7** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 +++e+L+++p+E+++Vn++++l +llde+v ++s+rd vL+l+++++P+v+++ + ++++ F +rf eal ++s+lfd+le+++pre e + XP_010096585.1 498 IQIEDLKLDPDEVIVVNCMYRLRNLLDETVVVDSPRDIVLNLIRKMNPDVFIMGAVNGAYSAPFFITRFREALFHFSTLFDMLETNVPREIPESM 592 ******************************************************************************************* PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +Ere+++re++nv+aceg+er+er et+++W+ r +aGF+++pl++++++ ak ++ ++ + + ++ + ++l++gWk+r ++++S+W XP_010096585.1 593 LIEREIIRREAMNVIACEGSERIERPETYKQWQVRNLRAGFRQLPLNQEIMQVAKDRVKSYYHKDFVIDRDGQWLLQGWKGRIVYALSSW 682 **********************************************************888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	68.648	286	663	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.8E-117	312	682	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 685 aa Download sequence Send to blast
MHLHRDLAPN PEVGDAHEDF DFSDVVLKYI SQMLMEEDME DKTCMFQESA ALQAQEQSFY 60 ELIGNKYPSQ DDDPTVPCAD QKHDSPDGSL ALQDSSCSIS NSTSSSASVV DPGWNFDPGD 120 YKSPQQVASQ SSYGSSNEAG NFVDGFVDSP MSTLRVHEAF NEIESVMQFK RGFEEASKFI 180 PNAESLIVDL EGYKFFSKEL KDSKDVTVDV EKKYESEYFL DGSRGKKHPH REDVAVEEGR 240 SNKQSAFCSE SNVSSDMFDM VLLNCGKNDS SLREALQNGA SKNSQQNGQS KGTNGGKARG 300 KKQGGKRDVV DLRTLLTLCA HSVAADDRRS AEKLLKQIRQ HSSPTGDGMQ RLAQCFADGL 360 EARMAGSGTQ VYKALIAKPT SAADVLKAYH LLLAACPFKK LSNFFSNKTI MNVAEKATRL 420 HIIDFGILYG FQWPCLIQRL SSRSEGPPKL RITGIDFPQP GFRPAERVEE TGRRLANYAE 480 TFKVPFEFNA IAQKWDTIQI EDLKLDPDEV IVVNCMYRLR NLLDETVVVD SPRDIVLNLI 540 RKMNPDVFIM GAVNGAYSAP FFITRFREAL FHFSTLFDML ETNVPREIPE SMLIEREIIR 600 REAMNVIACE GSERIERPET YKQWQVRNLR AGFRQLPLNQ EIMQVAKDRV KSYYHKDFVI 660 DRDGQWLLQG WKGRIVYALS SWNAA

Sequence ? help Back to Top

Protein Sequence Length: 685 aa Download sequence Send to blast

MHLHRDLAPN PEVGDAHEDF DFSDVVLKYI SQMLMEEDME DKTCMFQESA ALQAQEQSFY  60
ELIGNKYPSQ DDDPTVPCAD QKHDSPDGSL ALQDSSCSIS NSTSSSASVV DPGWNFDPGD  120
YKSPQQVASQ SSYGSSNEAG NFVDGFVDSP MSTLRVHEAF NEIESVMQFK RGFEEASKFI  180
PNAESLIVDL EGYKFFSKEL KDSKDVTVDV EKKYESEYFL DGSRGKKHPH REDVAVEEGR  240
SNKQSAFCSE SNVSSDMFDM VLLNCGKNDS SLREALQNGA SKNSQQNGQS KGTNGGKARG  300
KKQGGKRDVV DLRTLLTLCA HSVAADDRRS AEKLLKQIRQ HSSPTGDGMQ RLAQCFADGL  360
EARMAGSGTQ VYKALIAKPT SAADVLKAYH LLLAACPFKK LSNFFSNKTI MNVAEKATRL  420
HIIDFGILYG FQWPCLIQRL SSRSEGPPKL RITGIDFPQP GFRPAERVEE TGRRLANYAE  480
TFKVPFEFNA IAQKWDTIQI EDLKLDPDEV IVVNCMYRLR NLLDETVVVD SPRDIVLNLI  540
RKMNPDVFIM GAVNGAYSAP FFITRFREAL FHFSTLFDML ETNVPREIPE SMLIEREIIR  600
REAMNVIACE GSERIERPET YKQWQVRNLR AGFRQLPLNQ EIMQVAKDRV KSYYHKDFVI  660
DRDGQWLLQG WKGRIVYALS SWNAA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-47	312	682	5	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010096585.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024021541.1	0.0	scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	W9RQL5	0.0	W9RQL5_9ROSA; Uncharacterized protein
STRING	XP_010096585.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein

Link Out ? help Back to Top
Entrez Gene	21408035