PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010096504.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | B3 | ||||||||
Protein Properties | Length: 418aa MW: 47857.4 Da PI: 9.7753 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.8 | 7.2e-12 | 55 | 129 | 14 | 94 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 l++pk+f++++g+ + s + ++ ++g +W++ l +k++g ++ +kGW eF++ L+ g +++F+++g s+f v XP_010096504.1 55 YKLRIPKEFTKKYGK--TLSNPVGIKVPNGTKWKIWL--TKYDGDVWSAKGWLEFAHYFSLENGQTLIFSYKGCSQF--DV 129 4599*********94..577889999***********..********************************987777..44 PP | |||||||
2 | B3 | 47.2 | 3.9e-15 | 260 | 349 | 8 | 95 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 + +++ +v+p +f +h +k + tl+ ++gr+W+v+l + ++ y+l++GW+eFv++n+ k gD+++F+l++++e+e +k XP_010096504.1 260 GHLHNRYEFVFPIDFWFQHLYKVDG--AATLYVSDGRTWTVELYVrligLSDRKIYFLRTGWREFVEDNDPKIGDVCIFELTNKNEKEISFK 349 4455567789999999889555444..58889999********447764444444*************************998777766665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.8E-17 | 36 | 135 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.26E-18 | 40 | 135 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.67E-13 | 41 | 132 | No hit | No description |
PROSITE profile | PS50863 | 11.857 | 42 | 135 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.4E-7 | 43 | 135 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.8E-9 | 56 | 128 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-18 | 246 | 352 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-20 | 247 | 352 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.76E-19 | 251 | 354 | No hit | No description |
PROSITE profile | PS50863 | 13.183 | 253 | 356 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.8E-4 | 253 | 352 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.2E-13 | 258 | 349 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MSIHKAEREG VCKLQPIRRS TVAPYVHPRV RKLKDISPVT PHFLTRVSYN TLLDYKLRIP 60 KEFTKKYGKT LSNPVGIKVP NGTKWKIWLT KYDGDVWSAK GWLEFAHYFS LENGQTLIFS 120 YKGCSQFDVV IIGTNGLEID YPLIISNFNS TPIKETDIDD ASSCVKANEK SPPPFPCAQK 180 RMKKNLRAAP TQCGSREINP ENPMNRGNQP HSFESHRAKP QVRAVPKQRP LNKAEKDKAL 240 SRTKDFTSQY PHFKVVMQRG HLHNRYEFVF PIDFWFQHLY KVDGAATLYV SDGRTWTVEL 300 YVRLIGLSDR KIYFLRTGWR EFVEDNDPKI GDVCIFELTN KNEKEISFKV AIDRGGDYQN 360 SQPSQADKNT ANQDQREKSP SAISKTASSS YKDETCNMQS PVDHIAEEGA ALLRGNRC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010096504.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024021494.1 | 0.0 | B3 domain-containing transcription factor VRN1 isoform X1 | ||||
TrEMBL | W9RA51 | 0.0 | W9RA51_9ROSA; B3 domain-containing transcription factor VRN1 | ||||
STRING | XP_010096504.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 3e-29 | B3 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21400939 |