PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010096346.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | AP2 | ||||||||
Protein Properties | Length: 412aa MW: 46494.8 Da PI: 8.1874 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.5 | 5.7e-12 | 73 | 129 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n +r k + g ++ +e Aa+a++ a++k++g XP_010096346.1 73 SRFRGVSRHRWTGRYEAHLWDkGSWNPtQRkKGKQ-GAYDEEESAARAYDLAALKYWG 129 789******************88887786625555.********************98 PP | |||||||
2 | AP2 | 50.6 | 4.7e-16 | 172 | 223 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g XP_010096346.1 172 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAHAYDIAAIEYRG 223 89****99**********99966...3.6*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.6E-14 | 73 | 139 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.18E-17 | 73 | 139 | No hit | No description |
Pfam | PF00847 | 2.5E-8 | 73 | 129 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.7E-18 | 74 | 143 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.912 | 74 | 137 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-11 | 74 | 138 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-5 | 75 | 86 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.27E-24 | 172 | 233 | No hit | No description |
SuperFamily | SSF54171 | 1.44E-17 | 172 | 233 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.3E-11 | 172 | 223 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-25 | 173 | 237 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.676 | 173 | 231 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-18 | 173 | 232 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-5 | 213 | 233 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MEMTLQSALC PTKRPVCMLE GENLTATAPK FTKRRRRDHS SAVKEQQAEV QQPRADQSAA 60 TTTAATATVK RSSRFRGVSR HRWTGRYEAH LWDKGSWNPT QRKKGKQGAY DEEESAARAY 120 DLAALKYWGT TTFTNFPVSD YEKEIEIMKT LTKEEYLASL RRRSSGFSRG VSKYRGVARH 180 HHNGRWEARI GRVFGNKYLY LGTYSTQEEA AHAYDIAAIE YRGINAVTNF DLSTYIRWLR 240 PVFNSLAAQE PKPAATTTIP PTTSPYLIPT NEKPDSSIFN LNPFTLEDLE TSKPQEIFQS 300 QTPISPFINS SSPTALDLLF KSSVFRELVE KNLCAESDEN EGNDMKNLLQ MKNSHFDMIS 360 YDGNGSIDCT SSANSYALPG LESQEESALT LCNERGQSLW NFPSNFSSVN FN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 28 | 34 | PKFTKRR |
2 | 98 | 106 | PTQRKKGKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010096346.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP229645 | 1e-155 | KP229645.1 UNVERIFIED: Boehmeria nivea AP2/ERF domain-containing protein-like (ERF22) mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024021353.1 | 0.0 | AP2-like ethylene-responsive transcription factor At1g79700 | ||||
TrEMBL | W9R1M3 | 0.0 | W9R1M3_9ROSA; Ethylene-responsive transcription factor WRI1 | ||||
STRING | XP_010096346.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2198 | 32 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 2e-75 | AP2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21403959 |