PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010096266.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | B3 | ||||||||
Protein Properties | Length: 467aa MW: 53782.3 Da PI: 9.373 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.5 | 7.6e-16 | 62 | 143 | 11 | 98 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + + r+++p +f++++ + s+ t++ ++g +W+v l +k ++++++ +GW++Fv+ +++g f++F+++g+s+f +v +f+ XP_010096266.1 62 FLRFRIRIPENFVKKFRDE--LSTVATINVPDGHVWRVGL--KKADNKIWFHDGWQDFVERYAIRAGYFLIFRYEGNSTF--HVYIFN 143 567899*******999755..888899999**********..**********************************9999..999986 PP | |||||||
2 | B3 | 59.3 | 6.9e-19 | 351 | 441 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 vl ps+ + ++++lp fae++ +g++ ++l++++gr+W v++ yr+++ l++GW eF +n+L egD++vF++ +++e l+v+vf XP_010096266.1 351 VLRPSYLYRGCIMYLPSCFAEKNlSGVSG---FIKLQTSDGRQWPVRCLYRGGR--AKLSQGWYEFTLENNLGEGDVCVFEMLKTREIVLKVTVF 440 78899******************866743...5***************665555..66***********************98888888999998 PP - CS B3 98 r 98 r XP_010096266.1 441 R 441 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.352 | 52 | 145 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-13 | 58 | 145 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-13 | 62 | 143 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-20 | 63 | 144 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-20 | 63 | 144 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.94E-17 | 64 | 143 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-23 | 341 | 441 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.7E-23 | 342 | 441 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.15E-21 | 346 | 441 | No hit | No description |
PROSITE profile | PS50863 | 13.676 | 348 | 443 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.7E-18 | 348 | 443 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.4E-17 | 351 | 441 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MPRPYFHKLV LSSTIHAKQL VPSLSFLLYY RILRTGVLPG FAEIWVGDKD DETEIYVFGV 60 VFLRFRIRIP ENFVKKFRDE LSTVATINVP DGHVWRVGLK KADNKIWFHD GWQDFVERYA 120 IRAGYFLIFR YEGNSTFHVY IFNLSTSEIN YQSNALCSPQ AIYGSRYQIF EEMEDDDLDA 180 ISSFPTQRMA SGPLKNKLFG ERAEQLTSGK VFNPPSLQNL FNGSKLNCVN WGNEGNLHPA 240 KGAGNYQAEN QLTRDIGVQF NVMERKKVAD EVKLHGSEEE FRKTKKVGRK KRKLDPNGQD 300 SSIKHEEDGD MRFRFYESAS ARKRTVTAEE RERAINTAKT FEPINPFCRV VLRPSYLYRG 360 CIMYLPSCFA EKNLSGVSGF IKLQTSDGRQ WPVRCLYRGG RAKLSQGWYE FTLENNLGEG 420 DVCVFEMLKT REIVLKVTVF RVLEDGGLIN QPPQHSHTVS HSKLIRN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 2e-72 | 314 | 444 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 2e-72 | 314 | 444 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 281 | 293 | RKTKKVGRKKRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010096266.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024021268.1 | 0.0 | B3 domain-containing transcription factor VRN1 isoform X1 | ||||
TrEMBL | W9R1E8 | 0.0 | W9R1E8_9ROSA; B3 domain-containing transcription factor VRN1 | ||||
STRING | XP_010096266.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2147 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-133 | B3 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21409635 |