PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010096177.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

SRS

Protein Properties

Length: 296aa MW: 32802.6 Da PI: 9.8926

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010096177.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	186	1.5e-57	27	198	5	154
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskke 99 +++CqdCGnqakk+C+++RCRtCCks+gf+C+thvkstWvp ++rr+rqqq++++++++ +++++ + + ++l ++++ +++ l+s+++k+ XP_010096177.1 27 STRCQDCGNQAKKECVYMRCRTCCKSKGFQCQTHVKSTWVPLYRRRQRQQQQQQQQQQQLVNTSSSIHPQAQHLLHHHHHHHHHQGLNSSNPKRL 121 679**************************************************9999999999999999999999999999999999999998 PP DUF702 100 letss..............lPeevsseavfrcvrvssv.ddg.......eeelaYqtavsigGhvfkGiLydqGlee 154 + s +P ev+++a f+ vrvss+ ddg ++++aYqt+v igGhvfkGiLydqG+++ XP_010096177.1 122 RDNLSsaglgdhdgdgaknFPLEVNAMATFHVVRVSSMvDDGgpdhhhqQQQYAYQTSVGIGGHVFKGILYDQGPNH 198 8888789************************99635433433333678*********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.8E-53	27	197	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	5.8E-28	30	71	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.5E-19	141	196	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MMRMMMMMRE GSSSGGGFIM SSSTGMSTRC QDCGNQAKKE CVYMRCRTCC KSKGFQCQTH 60 VKSTWVPLYR RRQRQQQQQQ QQQQQLVNTS SSIHPQAQHL LHHHHHHHHH QGLNSSNPKR 120 LRDNLSSAGL GDHDGDGAKN FPLEVNAMAT FHVVRVSSMV DDGGPDHHHQ QQQYAYQTSV 180 GIGGHVFKGI LYDQGPNHHH HDQISGAYSS LGAADQITSF AQQPNFVNLM SSTSRRSGSS 240 AVGIDFNARS SSSPPAVAIG QRPLFLGSSS SSSWPMFHPP NGFSMSGMQF FPNRKS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010096177.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010096177.2	0.0	protein SHI RELATED SEQUENCE 1
TrEMBL	W9RPD6	0.0	W9RPD6_9ROSA; Uncharacterized protein
STRING	XP_010096177.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-36	SHI-related sequence 5

Link Out ? help Back to Top
Entrez Gene	21409545