PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010095602.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 243aa MW: 27764.7 Da PI: 9.4115 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.6 | 7.8e-27 | 78 | 167 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY eYA++vGF vr+ + ++s +g++ r++ C+k+g++ ++k + e+++r++ r gC+a++ vk+ek+gkw+vt++++eHnH+l+ XP_010095602.1 78 SFYAEYASRVGFVVRVMQRRRSGIDGRTLARRLGCNKQGFSPNQKGALGPEKKPRPSAREGCNATILVKMEKSGKWVVTRFVKEHNHPLV 167 5***************************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.2E-25 | 78 | 167 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 243 aa Download sequence Send to blast |
MTVPLRYKLR SAIAQLQISL QTKDTLFCFF RFRFPFMDLE KESGAMESSV EVDVGSSGGQ 60 ISEPYVGMEF ESEDAARSFY AEYASRVGFV VRVMQRRRSG IDGRTLARRL GCNKQGFSPN 120 QKGALGPEKK PRPSAREGCN ATILVKMEKS GKWVVTRFVK EHNHPLVVTA NGFSTEGDKD 180 KKIEELTMEL ERQEQLCATY REKLLSFMKN IEDETEELSA KIQVIVENVR RVESQVQKHS 240 RHR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010095602.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010095602.2 | 1e-152 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | W9QZE1 | 1e-180 | W9QZE1_9ROSA; Uncharacterized protein | ||||
STRING | XP_010095602.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G12850.1 | 4e-77 | FAR1 family protein |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 21390840 |