PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010095248.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family ZF-HD
Protein Properties Length: 311aa    MW: 35537.4 Da    PI: 8.9957
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010095248.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1024.1e-3283139360
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                     +vrY+eCl+NhAas Ggh++DGCgEfmps g++gt +alkCaAC+CHRnFHR+e + e
  XP_010095248.1  83 AVRYRECLRNHAASKGGHVLDGCGEFMPS-GDDGTEEALKCAACECHRNFHRKEIDGE 139
                     79**************************9.999********************98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.4E-3084136IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-2084137IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.1E-2885136IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.80386135IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.4E-29239309IPR009057Homeodomain-like
SuperFamilySSF466895.79E-18241308IPR009057Homeodomain-like
TIGRFAMsTIGR015652.1E-29247304IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MMRSNSTLDY SSPNRDSSSK LSSSPRDHHQ INHGNTTFNP APNQTLDHLS YQPNKPRREN  60
ISNPDPNPNT NPDPITPIAP VNAVRYRECL RNHAASKGGH VLDGCGEFMP SGDDGTEEAL  120
KCAACECHRN FHRKEIDGES QYNPNHKLSR NSNNNNSVVL PQHYLPPPPP TVLPNHNPHH  180
HYNHRNHHNS DHPQYPVHHH RRPIAAPVMM AFGGAESSSE DLHMFDHDHN INQSKAAAAV  240
QHAGESKKRF RTKFNQEQKE KMMELAEKLG WRIQKHDDQE VQRFCSEVGV KRQVFKVWMH  300
NNKQAMKKKQ V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-242463051675ZF-HD homeobox family protein
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00268DAPTransfer from AT2G18350Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010095248.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4083024e-79KC408302.1 Morus indica microsatellite MSCP157-C sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010095248.10.0zinc-finger homeodomain protein 6
RefseqXP_024020615.10.0zinc-finger homeodomain protein 6
RefseqXP_024020616.10.0zinc-finger homeodomain protein 6
RefseqXP_024020617.10.0zinc-finger homeodomain protein 6
TrEMBLW9R8Z40.0W9R8Z4_9ROSA; Uncharacterized protein
STRINGXP_010095248.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.12e-37homeobox protein 24