PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010095248.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 311aa MW: 35537.4 Da PI: 8.9957 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102 | 4.1e-32 | 83 | 139 | 3 | 60 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +vrY+eCl+NhAas Ggh++DGCgEfmps g++gt +alkCaAC+CHRnFHR+e + e XP_010095248.1 83 AVRYRECLRNHAASKGGHVLDGCGEFMPS-GDDGTEEALKCAACECHRNFHRKEIDGE 139 79**************************9.999********************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.4E-30 | 84 | 136 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-20 | 84 | 137 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.1E-28 | 85 | 136 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.803 | 86 | 135 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-29 | 239 | 309 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.79E-18 | 241 | 308 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.1E-29 | 247 | 304 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MMRSNSTLDY SSPNRDSSSK LSSSPRDHHQ INHGNTTFNP APNQTLDHLS YQPNKPRREN 60 ISNPDPNPNT NPDPITPIAP VNAVRYRECL RNHAASKGGH VLDGCGEFMP SGDDGTEEAL 120 KCAACECHRN FHRKEIDGES QYNPNHKLSR NSNNNNSVVL PQHYLPPPPP TVLPNHNPHH 180 HYNHRNHHNS DHPQYPVHHH RRPIAAPVMM AFGGAESSSE DLHMFDHDHN INQSKAAAAV 240 QHAGESKKRF RTKFNQEQKE KMMELAEKLG WRIQKHDDQE VQRFCSEVGV KRQVFKVWMH 300 NNKQAMKKKQ V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-24 | 246 | 305 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00268 | DAP | Transfer from AT2G18350 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010095248.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC408302 | 4e-79 | KC408302.1 Morus indica microsatellite MSCP157-C sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010095248.1 | 0.0 | zinc-finger homeodomain protein 6 | ||||
Refseq | XP_024020615.1 | 0.0 | zinc-finger homeodomain protein 6 | ||||
Refseq | XP_024020616.1 | 0.0 | zinc-finger homeodomain protein 6 | ||||
Refseq | XP_024020617.1 | 0.0 | zinc-finger homeodomain protein 6 | ||||
TrEMBL | W9R8Z4 | 0.0 | W9R8Z4_9ROSA; Uncharacterized protein | ||||
STRING | XP_010095248.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 2e-37 | homeobox protein 24 |
Link Out ? help Back to Top | |
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Entrez Gene | 21397722 |