PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010094805.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MIKC_MADS
Protein Properties Length: 228aa    MW: 25294.9 Da    PI: 4.8979
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010094805.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.53.5e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n + rqvtfskRr g++KKA+ELS+LCdae a+i+fsstgklyeyss
  XP_010094805.1  9 KKIDNITARQVTFSKRRRGLFKKAQELSTLCDAEMALIVFSSTGKLYEYSS 59
                    68***********************************************96 PP
2K-box32.53.6e-121271653674
           K-box  36 RhllGedLesLslkeLqqLeqqLekslkkiRskKnelll 74 
                     R+++Ge+Le+L+l eL++Le+ +e++l ++ +kK +l++
  XP_010094805.1 127 RQMKGEELEELNLDELKKLEKLVETGLGRVIEKKFNLII 165
                     9*********************************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.081161IPR002100Transcription factor, MADS-box
SMARTSM004326.4E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.1E-31277IPR002100Transcription factor, MADS-box
CDDcd002652.53E-41375No hitNo description
PRINTSPR004044.8E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-273859IPR002100Transcription factor, MADS-box
PfamPF014865.8E-7127165IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MTRQKIEIKK IDNITARQVT FSKRRRGLFK KAQELSTLCD AEMALIVFSS TGKLYEYSSS  60
SMQQILERHN FHSENPERLI SQPSLDELES TRESGLLSFV FAYSLWCQTL LALVPTFGLV  120
LVGPVFRQMK GEELEELNLD ELKKLEKLVE TGLGRVIEKK FNLIICEGDP ATRSQPTIET  180
ALKQTAGAIV VPADPGEQGQ SSDSITGICS SADLPEDHDS SDTALKLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-20196193Myocyte-specific enhancer factor 2B
1tqe_Q4e-20196193Myocyte-specific enhancer factor 2B
1tqe_R4e-20196193Myocyte-specific enhancer factor 2B
1tqe_S4e-20196193Myocyte-specific enhancer factor 2B
6c9l_A4e-20196193Myocyte-specific enhancer factor 2B
6c9l_B4e-20196193Myocyte-specific enhancer factor 2B
6c9l_C4e-20196193Myocyte-specific enhancer factor 2B
6c9l_D4e-20196193Myocyte-specific enhancer factor 2B
6c9l_E4e-20196193Myocyte-specific enhancer factor 2B
6c9l_F4e-20196193Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010094805.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024020322.11e-100MADS-box protein JOINTLESS isoform X4
SwissprotQ9FUY62e-58JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLW9R7S11e-166W9R7S1_9ROSA; MADS-box protein JOINTLESS
STRINGXP_010094805.11e-167(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89033106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.13e-43MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]