PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010094751.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | NAC | ||||||||
Protein Properties | Length: 338aa MW: 37969.6 Da PI: 8.29 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 175.2 | 1.9e-54 | 5 | 131 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL++kv++ ++ ++++ vd++k+ePwdLp k++ +ekewyfFs +d+ky+tg r+nrat++gyWk+tgkdke+++ XP_010094751.1 5 LPPGFRFHPTDEELITCYLARKVSDLGFTS-KAVAVVDLNKCEPWDLPDKASMGEKEWYFFSLKDRKYPTGLRTNRATEAGYWKTTGKDKEIFR- 97 79*************************999.88***************988999****************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 g lvg+kktLvfykgrap+gek++Wvmheyrle XP_010094751.1 98 AGVLVGMKKTLVFYKGRAPRGEKSNWVMHEYRLE 131 999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.14E-62 | 3 | 151 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.955 | 5 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.1E-28 | 6 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MEETLPPGFR FHPTDEELIT CYLARKVSDL GFTSKAVAVV DLNKCEPWDL PDKASMGEKE 60 WYFFSLKDRK YPTGLRTNRA TEAGYWKTTG KDKEIFRAGV LVGMKKTLVF YKGRAPRGEK 120 SNWVMHEYRL ENKHPFKNTK EEWVVCRVFQ KSTAMKKPQQ AASSRDPSIE SPCDDGNSIA 180 NEYGDIELPN LNAIANSSSG GFLSNNNIIS TQGFLTNNNM MSLNNMNWTN SNPLPPLSSW 240 PSNLLSPNLS MNSFLLKALQ LRNSASTYTQ PSTDNYSYNM PQGVSHFGTD IHDLNTTTNF 300 KLGSSSSSSS KMMNSSKIVD SASQVQQQEQ PFNLDSVW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-56 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-56 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-56 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-56 | 4 | 157 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-56 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-56 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-56 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-56 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-56 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-56 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-56 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-56 | 4 | 157 | 19 | 174 | NAC domain-containing protein 19 |
4dul_A | 4e-56 | 4 | 157 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-56 | 4 | 157 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00364 | DAP | Transfer from AT3G18400 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010094751.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010094751.1 | 0.0 | protein CUP-SHAPED COTYLEDON 1 | ||||
TrEMBL | W9QX19 | 0.0 | W9QX19_9ROSA; Protein CUP-SHAPED COTYLEDON 2 | ||||
STRING | XP_010094751.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4946 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18400.1 | 1e-109 | NAC domain containing protein 58 |
Link Out ? help Back to Top | |
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Entrez Gene | 21402876 |