PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010094642.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | SRS | ||||||||
Protein Properties | Length: 149aa MW: 16051.7 Da PI: 8.991 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 48.5 | 3e-15 | 2 | 51 | 113 | 154 |
DUF702 113 avfrcvrvssv.ddg.......eeelaYqtavsigGhvfkGiLydqGlee 154 a f+ vrvss+ ddg ++++aYqt+v igGhvfkGiLydqG+++ XP_010094642.1 2 ATFHVVRVSSMvDDGgpdhhhqQQQYAYQTSVGIGGHVFKGILYDQGPNH 51 89******99634433333333678***********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.7E-12 | 2 | 50 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 1.5E-15 | 2 | 49 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MATFHVVRVS SMVDDGGPDH HHQQQQYAYQ TSVGIGGHVF KGILYDQGPN HHHHDQISGA 60 YSSLGAADQI TSFAQQPNFV NLMSSTSRRS GSSAVGIDFN ARSSSSPPAV AIGQRPLFLG 120 SSSSSSWPMF HPPNGFSMSG MQFFPNRKS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010094642.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010096177.2 | 1e-104 | protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | W9RJC1 | 1e-103 | W9RJC1_9ROSA; Uncharacterized protein | ||||
TrEMBL | W9RPD6 | 1e-102 | W9RPD6_9ROSA; Uncharacterized protein | ||||
STRING | XP_010094642.1 | 1e-103 | (Morus notabilis) | ||||
STRING | XP_010096177.1 | 1e-103 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF882 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75520.1 | 5e-13 | SHI-related sequence 5 |
Link Out ? help Back to Top | |
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Entrez Gene | 21409545 |