PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010094493.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 1042aa MW: 115134 Da PI: 8.2952 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.9 | 9.3e-41 | 128 | 205 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCe hsk++++lv++++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ XP_010094493.1 128 MCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVAQQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 205 6**************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 7.6E-34 | 122 | 190 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.821 | 126 | 203 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.88E-37 | 127 | 207 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.8E-29 | 129 | 202 | IPR004333 | Transcription factor, SBP-box |
CDD | cd00204 | 5.80E-4 | 846 | 939 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1042 aa Download sequence Send to blast |
MEEVGAQVAA PIFIHQTLTS RYRDAPPVMT AAKKRDLPYH PTPNFQQNWN PKLWDWDAVR 60 FVAKPLDSDE KKRQEQAPVA AGHEDDERLR LNLGCGLISA ARSEEPAVVS RPTKRVRSGS 120 PGNSTYPMCQ VDNCKEDLSN AKDYHRRHKV CELHSKSTKA LVAQQMQRFC QQCSRFHPLS 180 EFDEGKRSCR RRLAGHNRRR RKTQPEDVAS RLILPGDRDN RSNGHIDIFN LLAAVARAQG 240 KNEEKNISCS QLPDKEQLLQ ILSKINSLPL PVDLAAKLHD LASLNRKISE QTSSDHHEKL 300 NGRTSQSTMD LLAVLSATLA PSAPDSLAVL SQRSSYSSDS GKTKMNCNDQ ASGPILQKQS 360 PQEFPSVGGD RSSTSYQSPM EDSDCQVQET RVNLPLQLFS SSPENDSPPK LASSRKYFSS 420 DSSNPIEERS PSSSPVVQKL FPMQTMAETV KSEKISAGRE VNVHVDSSRI HGCNMPFDLF 480 GGSNKGNDAG STLSVPHHAG YTSSGSDHSP SSLNSDVQDR TGRIMFKLFN KDPSHLPGTL 540 RTQIFNWLSN SPSEMESYIR PGCVIISVYV SMPSSAWEQL QDNLLQHLNS LVQSSASDFW 600 RSGRFLVHTG RQIASHKDGK VRISKSWSTW SSPELISVSP LAIVGGQETT LILKGRNLSN 660 LGTKIHCTYM GGYTTKEVTG STSHGTMYEE INLCGFKIHD ASPGVLGRCF IEVENGLKGN 720 SFPVIVADAS ICQELRILES VFDGKAKVSE VIAEDQNADE GRPRSKEEVL LFLNELGWLF 780 QRKRASSIPD GPDYSLGRFK FLLTFSVDKN CSALIKTLLD MLIERNLDGN ELSGDAVEML 840 SEIQLLHRAV KRRCRKMVDL LINYSVIGSN FVSKKYIFPP NHAGPGCITP LHLAACMSAS 900 DDLIDALTND PQEIGFNSWN SLLDANGQSP YAYALMTNNQ SYNMLVARKL AEKISGQITV 960 TIGNGMSTEF KQSRKSCAKC AVAATRHYKR VPGAQGLLQR PYVHSMLAIA AVCVCVCLFL 1020 RGLPDIGSVA PFKWENLDYG TI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-31 | 119 | 202 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 847 | 852 | RAVKRR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00155 | DAP | Transfer from AT1G20980 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010094493.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010094493.1 | 0.0 | squamosa promoter-binding-like protein 14 | ||||
Swissprot | Q8RY95 | 0.0 | SPL14_ARATH; Squamosa promoter-binding-like protein 14 | ||||
TrEMBL | W9R6Y2 | 0.0 | W9R6Y2_9ROSA; Squamosa promoter-binding-like protein 14 | ||||
STRING | XP_010094493.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9694 | 31 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G20980.1 | 0.0 | squamosa promoter binding protein-like 14 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 21407510 |
Publications ? help Back to Top | |||
---|---|---|---|
|