PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010094362.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 211aa MW: 23102.5 Da PI: 10.1255 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 73 | 2.4e-23 | 23 | 70 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + en sn+qvtfskRr g++ KA ELSvLC+ eva ++fs++gkl+++ XP_010094362.1 23 KLENGSNKQVTFSKRRSGLFRKAAELSVLCGSEVAALVFSPNGKLFTF 70 679********************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 27.488 | 14 | 74 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.8E-32 | 14 | 73 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.75E-35 | 15 | 82 | No hit | No description |
SuperFamily | SSF55455 | 1.96E-27 | 15 | 88 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-22 | 16 | 36 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.0E-23 | 24 | 70 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-22 | 36 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-22 | 51 | 72 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 211 aa Download sequence Send to blast |
MAVLNEITKE KKTQGRQRIE IKKLENGSNK QVTFSKRRSG LFRKAAELSV LCGSEVAALV 60 FSPNGKLFTF GHPSVDSVVL RYAHGTNTAP AAAASTSTNV VTNVSEEFNR DYVEAVKELE 120 AEKTRLAEEK KKAKIGGEKF WWDEGIEGMG MEELRQHMAA LIELRRRVAA RVQGLKAAPP 180 ENATSLAGVV PLQPASFFLA PLGFGNGNMH F |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 5e-18 | 15 | 101 | 2 | 85 | MEF2 CHIMERA |
6byy_B | 5e-18 | 15 | 101 | 2 | 85 | MEF2 CHIMERA |
6byy_C | 5e-18 | 15 | 101 | 2 | 85 | MEF2 CHIMERA |
6byy_D | 5e-18 | 15 | 101 | 2 | 85 | MEF2 CHIMERA |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010094362.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010094362.1 | 1e-154 | agamous-like MADS-box protein AGL61 | ||||
TrEMBL | W9QW40 | 1e-152 | W9QW40_9ROSA; Agamous-like MADS-box protein AGL62 | ||||
STRING | XP_010094362.1 | 1e-153 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-31 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 21386502 |