PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010094319.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

CAMTA

Protein Properties

Length: 1036aa MW: 117321 Da PI: 8.4744

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010094319.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	164.7	1.6e-51	27	142	4	118
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 e + rwl+++ei+aiL n + ++++ ++ + pksgs++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+++nptf rr XP_010094319.1 27 EaTGRWLRPNEIHAILSNNKYFTIHVKPVNLPKSGSIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPTFVRR 121 4478***************************************************************************************** PP CG-1 98 cywlLeeelekivlvhylevk 118 cywlL+++le+ivlvhy+e++ XP_010094319.1 122 CYWLLDKSLEHIVLVHYRETQ 142 ****************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	77.458	21	147	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	6.1E-76	24	142	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	7.8E-46	28	140	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	3.08E-13	488	573	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	1.24E-16	679	789	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.10E-13	679	783	No hit	No description
Gene3D	G3DSA:1.25.40.20	1.6E-15	682	787	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.698	691	787	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	10.9	724	756	IPR002110	Ankyrin repeat
SMART	SM00248	2.9E-5	724	753	IPR002110	Ankyrin repeat
Pfam	PF00023	1.5E-5	725	755	IPR002110	Ankyrin repeat
SMART	SM00248	2200	763	794	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	1.15E-5	883	958	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	27	887	909	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.614	891	917	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.34	910	932	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.45	911	935	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	9.0E-4	913	931	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	42	990	1012	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	1.15E-5	990	1016	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	7.529	992	1020	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1036 aa Download sequence Send to blast
MERQLVGSEI HGFHTLQDLD FATIMEEATG RWLRPNEIHA ILSNNKYFTI HVKPVNLPKS 60 GSIVLFDRKM LRNFRKDGHN WKKKKDGKTV KEAHEHLKVG NEERIHVYYA HGQDNPTFVR 120 RCYWLLDKSL EHIVLVHYRE TQESQGSPFT PGNSNSSSTS DPSAPWIASD ELDSRANNAF 180 HVGGTDLLES RDNLTVRNHE QRLYDINTLE WDELLVANAP VNSAASKGGD KVPLFNQQNQ 240 GAGNGFFAGV NGVEIGASRK FRYLGSIVQY EGDIEEDVQH GIKAGMVKWK NATGVLCDGK 300 MPIKLKEKFY RIVIRPTMLY GSECWVIKRQ YICKMSVTEM RMLRWMSGHT RMDRIRNEVI 360 RSKVGIAPIE DKGTINSVTE LSSFNNLMNP TAGNAHGNLL NDVYIPKMEG QSNSDSIGVG 420 TGDSLDVLVD NGLHSQDSFG RWIENFMTED PRSIEDPMLG TSISSVKESF VSPEMSHLQS 480 PVPEQIFNII DMSPEWGYSN EKTKILVTGF FHEQYQHLAK SNLLCVYGDA SVSAEIVQVG 540 VYRCLVSPHS PGSVNLFMSI DGQKPISQVL NFECRSPILS APVVSSEEKY NWEEFRTQMR 600 LARLLFSTSK SLNILSSKVS PNALKEAKKF ADKTSHVSNT WEVFMKSIEN SKIPFPQAKD 660 NLFRLILRDR LKDWLLERIT EGSKSTDFDI HGQGVIHLCA ILGYTWAIHL FSLSGLSLDF 720 RDKLGWTALH WAAYCGNEKM VGALLTAGAK PNLVTDPTSA NPAGYTAGDI AYMRGYEGLA 780 AYLSEKGLVE QFNDMSIAGN ASGTIETSTN DIANNENLSE EQLYLKDTLA AYRTAADAAA 840 RIQLAFREHS LKLRTKAVEF SSPEEEARSI IAAMKIQHAF RNFDTRKKIV AAARIQYRFR 900 TWKIRKDFLH TRRQVIKIQA AFRGYQVRRQ YCKILWSVGV LEKAILRWRF KRRGFRGLQV 960 NPTEAVSDQG RESDTEEDFY KTSQKQAEDR VERSVVRVQA LFRSKKAQDE YQAMKLAHNR 1020 AKLEYDILDP DIDINS

Sequence ? help Back to Top

Protein Sequence Length: 1036 aa Download sequence Send to blast

MERQLVGSEI HGFHTLQDLD FATIMEEATG RWLRPNEIHA ILSNNKYFTI HVKPVNLPKS  60
GSIVLFDRKM LRNFRKDGHN WKKKKDGKTV KEAHEHLKVG NEERIHVYYA HGQDNPTFVR  120
RCYWLLDKSL EHIVLVHYRE TQESQGSPFT PGNSNSSSTS DPSAPWIASD ELDSRANNAF  180
HVGGTDLLES RDNLTVRNHE QRLYDINTLE WDELLVANAP VNSAASKGGD KVPLFNQQNQ  240
GAGNGFFAGV NGVEIGASRK FRYLGSIVQY EGDIEEDVQH GIKAGMVKWK NATGVLCDGK  300
MPIKLKEKFY RIVIRPTMLY GSECWVIKRQ YICKMSVTEM RMLRWMSGHT RMDRIRNEVI  360
RSKVGIAPIE DKGTINSVTE LSSFNNLMNP TAGNAHGNLL NDVYIPKMEG QSNSDSIGVG  420
TGDSLDVLVD NGLHSQDSFG RWIENFMTED PRSIEDPMLG TSISSVKESF VSPEMSHLQS  480
PVPEQIFNII DMSPEWGYSN EKTKILVTGF FHEQYQHLAK SNLLCVYGDA SVSAEIVQVG  540
VYRCLVSPHS PGSVNLFMSI DGQKPISQVL NFECRSPILS APVVSSEEKY NWEEFRTQMR  600
LARLLFSTSK SLNILSSKVS PNALKEAKKF ADKTSHVSNT WEVFMKSIEN SKIPFPQAKD  660
NLFRLILRDR LKDWLLERIT EGSKSTDFDI HGQGVIHLCA ILGYTWAIHL FSLSGLSLDF  720
RDKLGWTALH WAAYCGNEKM VGALLTAGAK PNLVTDPTSA NPAGYTAGDI AYMRGYEGLA  780
AYLSEKGLVE QFNDMSIAGN ASGTIETSTN DIANNENLSE EQLYLKDTLA AYRTAADAAA  840
RIQLAFREHS LKLRTKAVEF SSPEEEARSI IAAMKIQHAF RNFDTRKKIV AAARIQYRFR  900
TWKIRKDFLH TRRQVIKIQA AFRGYQVRRQ YCKILWSVGV LEKAILRWRF KRRGFRGLQV  960
NPTEAVSDQG RESDTEEDFY KTSQKQAEDR VERSVVRVQA LFRSKKAQDE YQAMKLAHNR  1020
AKLEYDILDP DIDINS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010094319.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024019984.1	0.0	calmodulin-binding transcription activator 5
Refseq	XP_024019986.1	0.0	calmodulin-binding transcription activator 5
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	W9QVX0	0.0	W9QVX0_9ROSA; Calmodulin-binding transcription activator 5
STRING	XP_010094319.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4288	34	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Entrez Gene	21391127

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]