PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010093961.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 279aa MW: 31585.5 Da PI: 8.0634 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 109.6 | 3.6e-34 | 56 | 197 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......s 80 lp+G++F+Ptd+el+ ++L+ kv++++ ++++ +i+ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ + XP_010093961.1 56 LPAGVKFDPTDQELL-DHLEGKVTRSEtckvhplIDEFIpTIEGEnGICYTHPQKLP-GVSKDGLVRHFFHRPSKAYTTGTRKRRKVHtdedggE 148 799************.99****9999877665443332333665557**********.555666688******************7444566557 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+++v++ +g+++g kk+Lv+y g+++k+ekt+Wvmh+y+l XP_010093961.1 149 TRWHKTGKTRPVFV-GGRVKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 197 78************.9*************6657999999*********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-39 | 51 | 216 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.964 | 56 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-15 | 57 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 279 aa Download sequence Send to blast |
MTRCNIDDRG VLLDQTIINN AQEHKDHHNP ITRTCPSCGH QIKCQDQAGI HHLPGLPAGV 60 KFDPTDQELL DHLEGKVTRS ETCKVHPLID EFIPTIEGEN GICYTHPQKL PGVSKDGLVR 120 HFFHRPSKAY TTGTRKRRKV HTDEDGGETR WHKTGKTRPV FVGGRVKGYK KILVLYTNYG 180 KQRKPEKTNW VMHQYHLGNN EEEKEGELVV SKVFYQTQPR QCGSVMKDLM IKGSQNGNDH 240 SLVEYCNNSS SFLSFENGGQ NEESATPEMV HHFAGSFVS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010093961.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010093961.1 | 0.0 | NAC domain-containing protein 73 | ||||
Swissprot | O49459 | 1e-119 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | W9QV93 | 0.0 | W9QV93_9ROSA; NAC domain-containing protein 8 | ||||
STRING | XP_010093961.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1228 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-108 | NAC domain containing protein 73 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 21393817 |
Publications ? help Back to Top | |||
---|---|---|---|
|