PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010093781.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family B3
Protein Properties Length: 372aa    MW: 42545.1 Da    PI: 6.3768
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010093781.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B31053.8e-33901931100
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k ltpsdv+k++rlv+pk++ae++      gg+  ++  l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F++++r++
  XP_010093781.1  90 FEKPLTPSDVGKLNRLVIPKQHAEKYfplgggGGD--SGLLLSFEDESGKFWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVVLFERHRRDG 182
                     99****************************76555..6779************************************************999999 PP

                     E..EEEEE-SS CS
              B3  90 felvvkvfrks 100
                      +l+++++r+s
  XP_010093781.1 183 DRLFIGWRRRS 193
                     99******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.7E-4184197IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.15E-3285195IPR015300DNA-binding pseudobarrel domain
CDDcd100171.47E-2888182No hitNo description
SMARTSM010192.0E-2790193IPR003340B3 DNA binding domain
PROSITE profilePS5086314.52290193IPR003340B3 DNA binding domain
PfamPF023621.7E-2990193IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDNNINTSLS STPQKPHYIP EFYNHYYPHN PQEQQQQQQQ PSPMSTSTYS FNLNQDENDN  60
TDETDQTYER QQQQQQEEND VIDDDKEPMF EKPLTPSDVG KLNRLVIPKQ HAEKYFPLGG  120
GGGDSGLLLS FEDESGKFWR FRYSYWNSSQ SYVLTKGWSR YVKEKRLDAG DVVLFERHRR  180
DGDRLFIGWR RRSDSAQDCG GGGQVAAQVS GGSSNRGFYS APHPYPAPHH HHYQHHHHHH  240
HIPATPYQPD YIHAGISSPA ENNQTTTVVN NNNSNSSNSS KILRLFGVNL ECQLADHESN  300
PSTPDGSSLS SHGPPPPPHH NFYPHAYHSE YHHMSFGIMR NMKSLKELFN ILQVSTSSNS  360
EWTDEDGMEV RI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-48851923113B3 domain-containing transcription factor NGA1
5os9_B2e-48851923113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010093781.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024019678.10.0B3 domain-containing protein At2g36080 isoform X3
SwissprotQ9FNI32e-64Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLW9R2E50.0W9R2E5_9ROSA; B3 domain-containing protein
STRINGXP_010093781.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.21e-52B3 family protein