PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010093108.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | NAC | ||||||||
Protein Properties | Length: 293aa MW: 34130.4 Da PI: 7.1949 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.8 | 1.5e-51 | 9 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelv++yL +k+++ ++++ +ike+d+yk++Pw+Lp+++ +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk++ + XP_010093108.1 9 LPPGFRFHPTDEELVNHYLIRKCASLPISV-PIIKEIDLYKFDPWQLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGRGYWKATGADKPIGK- 101 79****************************.88***************7666789*************************************98. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 + g+kk Lvfy+g+ap+g+kt+W+mheyrl XP_010093108.1 102 -PKPLGIKKALVFYSGKAPRGVKTNWIMHEYRL 133 .789***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-62 | 5 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.125 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.0E-27 | 10 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MTTGEQLELP PGFRFHPTDE ELVNHYLIRK CASLPISVPI IKEIDLYKFD PWQLPEMALY 60 GEKEWYFFSP RDRKYPNGSR PNRAAGRGYW KATGADKPIG KPKPLGIKKA LVFYSGKAPR 120 GVKTNWIMHE YRLANVDRSA SKKNNSRLDD WVLCRIYNKK GNVELKNYPT GQNFEELNSE 180 FEDKKPDIAL RNFPNDRLYM DMSDSIPKPH SHTHTTDSSC TEHVLSPEIT YDNREVQSQP 240 KWNNGFENNN NAFDNFNYME GFLDQDPFGS QVQFQLDQLS PLQDMFTFLQ KPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-78 | 6 | 164 | 12 | 173 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010093108.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010093108.1 | 0.0 | NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 1e-122 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | W9R0J7 | 0.0 | W9R0J7_9ROSA; NAC domain-containing protein 2 | ||||
STRING | XP_010093108.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1258 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-103 | NAC family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21391307 |