PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010092627.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family B3
Protein Properties Length: 877aa    MW: 96212.7 Da    PI: 7.5112
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010092627.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.48.5e-16335427898
                     -HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   8 sdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     sd+++ grlvlpkk+ae++   ++++e+  l+++d +g+ W +++++  +++s++yvl+ G     ++ +L++gD+v+F++ +  e++lv+++++
  XP_010092627.1 335 SDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDAKGKGWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDIVTFSRLE-PEGKLVMGFRK 427
                     899999***************555566778***************9989999999***9.********************766.77777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.291328429IPR003340B3 DNA binding domain
SMARTSM010192.7E-13328429IPR003340B3 DNA binding domain
SuperFamilySSF1019362.22E-15334427IPR015300DNA-binding pseudobarrel domain
CDDcd100173.90E-17334427No hitNo description
Gene3DG3DSA:2.40.330.106.1E-26334435IPR015300DNA-binding pseudobarrel domain
PfamPF023625.5E-13335427IPR003340B3 DNA binding domain
PROSITE profilePS5105012.625556606IPR011124Zinc finger, CW-type
PfamPF074962.4E-11561603IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 877 aa     Download sequence    Send to blast
MATSASSSSP AASMVCYNPE CKELKPERPR KGWRLRTGEL AELCDRCALM YFYVTQVLLS  60
RKEGFVRLSM EMLLAGGVVN LVESGFIVDV LFLVTSSHYW TLEELNALHT SNPAWHPSLF  120
FHSPVPERLK DLSVKNWSQL AGSGPVPWRQ APSLFSSSIP SSEMNSRSPY EVDISSALNK  180
LSTTERITVS STEKKKIEDL SERLQNGCLK LGSREILENG TAGKNCEEQI SSCLSMSSSL  240
KEDQSTQQFG LTVPYSSTND TNEQVGVSGT TLRPSPPSLS KQFIGNLHNG IDSSGDTHIR  300
NARPRADARG KNQLLPRYWP RFTDQELQQI SGDASDAGRI GRLVLPKKCA EAYFPPISQP  360
EGLPLKVQDA KGKGWIFQFR FWPNNNSRMY VLEGVTPCIQ SMQLQAGDIV TFSRLEPEGK  420
LVMGFRKASA APPSDQENET NKNGNGVSAR GDAELADPSS WSKVDKSGYI AKEVLGAKAL  480
IPRKRKSSTL VSKSKRIRNE NEDVMELKLT WEEAQGLLRP PNNHVPSIVV IEGIEFEEYE  540
DAPVLGKPTI FATTNVGGKI QWVQCEDCSK FRKLPADALL PSKWTCSDNS WDPERSVCSA  600
AQELTSEELE DLLPQSVSVA PKKMKAAKQD AEHVEALEGL DTLANLAILG EGDSLPASAQ  660
ATTKHPRHRS GCSCIVCIQP PSGKGPKHKQ TCTCNVCLTV KRRFRTLMLR REKKQSEKEA  720
ETTRKKQHQQ QLPPQKLQVD TLISSNASDI PKQPKIVCEV LDDEPSKVKT STSPFKGQID  780
LNIQPEREEE LSPCSDSGDM MKLLQDATER YLRQQKLSSS GGCENPSGNH SRRDGGDAVG  840
GKPNNGINLG STQHDAADDG CPATLSVKAS VSSTAAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-553204312127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010092627.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024018896.10.0B3 domain-containing protein Os07g0563300 isoform X2
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLW9QZ540.0W9QZ54_9ROSA; B3 domain-containing protein
STRINGXP_010092627.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77383138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-155HSI2-like 1