PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010092608.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GATA
Protein Properties Length: 351aa    MW: 38134.7 Da    PI: 6.2602
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010092608.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA551.1e-17249282134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  XP_010092608.1 249 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 282
                     99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.5E-782336IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.596243279IPR000679Zinc finger, GATA-type
SMARTSM004011.6E-16243293IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.0E-14247280IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577166.65E-15247306No hitNo description
CDDcd002023.99E-14248295No hitNo description
PROSITE patternPS003440249274IPR000679Zinc finger, GATA-type
PfamPF003202.4E-15249282IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MIGPNFMDEI DCGSFFDHID DLLVDFSGDD VDTGLGPKPE ANPFTSIWST TQSESLPSSD  60
SVFSGKSASD LSAELSVPYE DIVQLEWLSN FVEDSFSGGS LAINKEQDSS SLNKESSHHQ  120
FQTSSPVSVL ESSSSCSGGE KNAPCSPETV NPGRRGRARS KRPRPATFNP RPAIQLISPS  180
SSVIEAPQPF VAAPKSSSDS ENFAESRPVI KIPKQDPVEQ KKKKKIKLSF PLAPVETNQN  240
QSSQAVRKCM HCEITKTPQW RAGPMGPKTL CNACGVRYKS GRLFPEYRPA ASPTFVPSLH  300
SNSHKKVLEM RTKGGEMVAV AGTTTTMTAM PELIPNTNSS ISLDYIDMRE N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160164KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010092608.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092608.10.0GATA transcription factor 8
TrEMBLW9R1Q50.0W9R1Q5_9ROSA; GATA transcription factor
STRINGXP_010092608.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-41GATA family protein