PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010092585.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB_related
Protein Properties Length: 338aa    MW: 37220.1 Da    PI: 9.7174
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010092585.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.31.8e-1369113147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
   XP_010092585.1  69 RESWTEQEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 113
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.87E-1663119IPR009057Homeodomain-like
PROSITE profilePS5129414.98664118IPR017930Myb domain
TIGRFAMsTIGR015572.3E-1867116IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.607.6E-767119IPR009057Homeodomain-like
SMARTSM007177.9E-1168116IPR001005SANT/Myb domain
PfamPF002493.7E-1169113IPR001005SANT/Myb domain
CDDcd001672.32E-871114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MVSVNPNPAQ GFHFFNPMNM GLPGLNSMPP PTAPANLSAG SATAAVNSAP LTEDPSKKIR  60
KPYTITKSRE SWTEQEHDKF LEALQLFDRD WKKIEAFIGS KTVIQIRSHA QKYFLKVQKS  120
GTSEHVPPPR PKRKAAHPYP QKAPKNAPNV AHLTGPFQSS TASLEPEYIY RPDSSSVLGN  180
PVTSATLSSW NYGSVPPVNV AQVTKDDGGL FVPGAANNSC YSSSTESTPR TRQTSETIDP  240
RLHSKTMRVM PDFAQVYSFI GSVFDPNETG HLQRLKQMNP INLETALLLM RNLSINLVSP  300
EFEHHRRLLS SYDADAERAK TVGACSFPFK SENVILSA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00423DAPTransfer from AT4G01280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010092585.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092585.10.0protein REVEILLE 5 isoform X2
SwissprotC0SVG51e-116RVE5_ARATH; Protein REVEILLE 5
TrEMBLW9RDD50.0W9RDD5_9ROSA; Transcription factor ASG4
STRINGXP_010092585.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11193396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.21e-104MYB_related family protein
Publications ? help Back to Top
  1. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]