PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010092474.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 338aa    MW: 38499.9 Da    PI: 6.9224
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010092474.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.5e-171360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l+  ++ +G g+W++I++  g+ R++k+c++rw +yl
   XP_010092474.1 13 KGLWSPEEDEKLITHITTYGHGSWSSIPKLAGLQRCGKSCRLRWINYL 60
                     678*******************************************97 PP
2Myb_DNA-binding568.8e-1866108145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +g++T+eE+++++d+++ lG++ W+ Ia++++ gRt++++k++w+
   XP_010092474.1  66 KGSFTQEEEQIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWN 108
                      799*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-26563IPR009057Homeodomain-like
PROSITE profilePS5129417.188860IPR017930Myb domain
SuperFamilySSF466892.91E-3011107IPR009057Homeodomain-like
SMARTSM007175.3E-131262IPR001005SANT/Myb domain
PfamPF002496.0E-151360IPR001005SANT/Myb domain
CDDcd001675.65E-111660No hitNo description
PROSITE profilePS5129426.9461115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2664116IPR009057Homeodomain-like
SMARTSM007173.7E-1765113IPR001005SANT/Myb domain
PfamPF002494.8E-1666109IPR001005SANT/Myb domain
CDDcd001673.51E-1268108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGHRCCSKQK AKKGLWSPEE DEKLITHITT YGHGSWSSIP KLAGLQRCGK SCRLRWINYL  60
RPDLKKGSFT QEEEQIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSS IKKKLISQGL  120
DPQTHNLISS SSHQRAFSNK NNSFVVSHEN QKQPISAFSM ISVVHEKTKH NSSPLISPPY  180
NNVQTTDIST VDQYKGPIIG VKNSSNLATW TVKDQNYSSH DMQYYYGSSS IENSTPNISS  240
SSSSSVDIYQ HLPMPGLLLD EFGIWDSSFQ PFEAPKTISE DLGDNHQEQQ LQQNDEKIWD  300
KNFENYSFDH GFMESALLSE ALLCHDLSSV QYDLAWNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-331311527128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010092474.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092474.10.0myb-related protein 308
TrEMBLW9QYT30.0W9QYT3_9ROSA; Transcription factor
STRINGXP_010092474.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.12e-82myb domain protein 67