PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010092196.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | LBD | ||||||||
Protein Properties | Length: 177aa MW: 20389.9 Da PI: 7.4606 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129 | 2.1e-40 | 5 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrrkC++dC+l+pyfp ++p++fa+vh+++Gasnv+k+l++l+ ++ r +a++sl++eA+ r++dPvyG+vg+i++l++q++++++el XP_010092196.1 5 RCAACKYLRRKCPPDCTLSPYFPPNDPQRFACVHRIYGASNVVKMLQQLDSHDlRARAADSLFFEAQRRIEDPVYGCVGIITQLHHQIHEAETEL 99 6************************************************99999***************************************** PP DUF260 95 allkee 100 a++++e XP_010092196.1 100 AKTRAE 105 *99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.661 | 4 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.0E-39 | 5 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MSPRRCAACK YLRRKCPPDC TLSPYFPPND PQRFACVHRI YGASNVVKML QQLDSHDLRA 60 RAADSLFFEA QRRIEDPVYG CVGIITQLHH QIHEAETELA KTRAELALRS SGTALTSHVQ 120 DQTYHLHHHD HHYHNRDHHD QLLEIMESDL NNLLQGQSSI HEQSRFGPTT KAPNWLV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-35 | 6 | 112 | 12 | 117 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-35 | 6 | 112 | 12 | 117 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00381 | DAP | Transfer from AT3G26620 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010092196.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010092196.1 | 1e-131 | LOB domain-containing protein 23 | ||||
Swissprot | P59467 | 6e-51 | LBD23_ARATH; LOB domain-containing protein 23 | ||||
TrEMBL | W9RC85 | 1e-130 | W9RC85_9ROSA; Uncharacterized protein | ||||
STRING | XP_010092196.1 | 1e-131 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3697 | 30 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26620.1 | 5e-53 | LOB domain-containing protein 23 |
Link Out ? help Back to Top | |
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Entrez Gene | 21396686 |