PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010092061.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family B3
Protein Properties Length: 221aa    MW: 25052 Da    PI: 10.3786
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010092061.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.86.4e-16132215190
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+k++++s+v+   +l lp +f++++ +   ++  +tl de+g+++e  +  rk++    l++GWk+F  a++L +gD ++F+l++ s f
  XP_010092061.1 132 FIKTMLQSHVSGGFWLGLPVHFCKTNLLR--RDEVMTLIDEEGEEYETIYLARKTG----LSGGWKGFSVAHKLGDGDALIFQLIRPSAF 215
                     89************************666..4558***************656665....************************987777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.4E-18126217IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-22126218IPR015300DNA-binding pseudobarrel domain
CDDcd100174.51E-24130217No hitNo description
PfamPF023623.9E-13132215IPR003340B3 DNA binding domain
PROSITE profilePS5086311.223132221IPR003340B3 DNA binding domain
SMARTSM010191.1E-19132218IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MVAAKRKVSS YEEIRLRRLE ENKNRLEALN LPNLAQALRN SSPLKPSPIK RVKKPRTPEK  60
EVVAVRRSGR VANKPTPVYK EVVFDRVVIP RRCIGKPRDL SNRVYASEEA RAEAIERAEK  120
AVSGLEPEYP NFIKTMLQSH VSGGFWLGLP VHFCKTNLLR RDEVMTLIDE EGEEYETIYL  180
ARKTGLSGGW KGFSVAHKLG DGDALIFQLI RPSAFKVIET L
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010092061.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092061.21e-158B3 domain-containing protein At5g42700
SwissprotQ9FMZ41e-81Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLW9RBU41e-159W9RBU4_9ROSA; B3 domain-containing protein
STRINGXP_010092061.11e-160(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.14e-62B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]