PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010092005.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

C2H2

Protein Properties

Length: 259aa MW: 29306.9 Da PI: 7.3515

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010092005.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.3e-05	90	109	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+k+F+r n++ H+ XP_010092005.1 90 FSCSVCNKTFNRYNNMQMHM 109 89*****************9 PP
2	zf-C2H2	14	0.00015	175	197	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F + + ++H +++ XP_010092005.1 175 FGCRKCGKPFAVRGDWRTHEKNC 197 56*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.65E-5	84	112	No hit	No description
PROSITE profile	PS50157	10.429	90	117	IPR007087	Zinc finger, C2H2
Pfam	PF12874	6.4E-5	90	109	No hit	No description
SMART	SM00355	0.071	90	112	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.7E-6	90	109	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	92	112	IPR007087	Zinc finger, C2H2
SMART	SM00355	200	138	170	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.08E-5	158	195	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.2E-5	161	195	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	140	175	195	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MKIPFFSLLA LAETTISSSN TAIFHHSSLN QPQNDQSLMS RHEEGVTVAL HIGPPNAGSV 60 VRPNHSGGPP IESQYWIPSL AQILVGPTQF SCSVCNKTFN RYNNMQMHMW GHGSQYRKGP 120 ESLRGTKPAS SMLRLSCYCC AEGCKNNIDH PRSRPLKDFR TLQTHYKRKH GAKPFGCRKC 180 GKPFAVRGDW RTHEKNCGKL WFCICRLLKD HVRAFGDGHT PHTAELCEIE KEDADEYDDD 240 DHDGDEEERE NDSFESVVF

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269\|PubMed:18643975, ECO:0000305\|PubMed:20541552}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010092005.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024018524.1	1e-161	LOW QUALITY PROTEIN: zinc finger protein WIP6
Swissprot	Q9FX68	1e-104	ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBL	W9QPR1	0.0	W9QPR1_9ROSA; Protein TRANSPARENT TESTA 1
STRING	XP_010092005.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13290.1	1e-106	C2H2-like zinc finger protein

Link Out ? help Back to Top
Entrez Gene	21389693