PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010091976.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 203aa MW: 23689 Da PI: 7.0699 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 81.4 | 6.1e-26 | 43 | 94 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyeyss 51 k ien++nrqvt+skRrngi+KKA+ELSvLCda+v++i++ + +++e+++ XP_010091976.1 43 KMIENQTNRQVTYSKRRNGIFKKASELSVLCDAKVSIIMIPRNaTRVHEFCT 94 68*************************************9876257999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.1E-31 | 35 | 95 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.665 | 35 | 96 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.33E-31 | 36 | 124 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.38E-34 | 36 | 115 | No hit | No description |
PRINTS | PR00404 | 7.1E-19 | 37 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-21 | 45 | 92 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-19 | 57 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-19 | 72 | 93 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MDFKSDIDLI HHGEEDHHDH DHDDQDHDQK KPIKMGRGKI QCKMIENQTN RQVTYSKRRN 60 GIFKKASELS VLCDAKVSII MIPRNATRVH EFCTPGSSTK EMLDRYQRAK GIDVWKTLYE 120 VKSLEDRYFR LLHEITMILI SIDRHFLLLL YVLIMKAAQR EDSPYGPMYQ ENIGGGYESD 180 NIGQWGIQSF RFPPPQPSPE LSL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010091976.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024018519.1 | 2e-96 | MADS-box protein CMB2 isoform X2 | ||||
TrEMBL | W9QPZ7 | 1e-151 | W9QPZ7_9ROSA; Floral homeotic protein DEFICIENS | ||||
STRING | XP_010091976.1 | 1e-151 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 6e-35 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21391348 |