PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010091883.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 115aa MW: 13772 Da PI: 10.3903 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.6 | 1.6e-11 | 11 | 88 | 9 | 83 |
HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEE CS B3 9 dvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFk 83 + k + +++p + ++ + + + +++++ d +g We+++ +rk+++ ++ ++GW +Fv+ +gL++gD ++++ XP_010091883.1 11 NDEK-RKFSVPAEWLR-IlpDFREGHEVMVKAVDGKGFYWEFNCVIRKRGRYrkpVFQSQGWLKFVNKKGLRVGDKIILY 88 3333.34899999994.55855566778899999999*******8755554457677889*****************999 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 2.76E-10 | 4 | 88 | No hit | No description |
SuperFamily | SSF101936 | 4.45E-10 | 5 | 90 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.7E-12 | 5 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.5E-9 | 12 | 88 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 115 aa Download sequence Send to blast |
MAPLQKYLTE NDEKRKFSVP AEWLRILPDF REGHEVMVKA VDGKGFYWEF NCVIRKRGRY 60 RKPVFQSQGW LKFVNKKGLR VGDKIILYEG EDLFRGTKYR IRAQKCNREG LWVDV |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010091883.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021824681.1 | 1e-28 | uncharacterized protein LOC110765763 | ||||
TrEMBL | W9QZS6 | 6e-79 | W9QZS6_9ROSA; Uncharacterized protein | ||||
STRING | XP_010091883.1 | 1e-79 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2060 | 7 | 78 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 21385139 |