PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010091613.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MIKC_MADS
Protein Properties Length: 261aa    MW: 30449.7 Da    PI: 8.4497
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010091613.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.18.7e-32959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRrng+lKKA+E+SvLCdaevavi+fs++gkl+eys+
  XP_010091613.1  9 KRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSHKGKLFEYST 59
                    79***********************************************96 PP
2K-box67.25.7e-23851909100
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK..............nellleqieelqkkekelqe 89 
                      e++ + +++ e+++L ++ie Lqr+  h+lGe+LesLs k++q+LeqqL+++lk+iR++K              n+l+ e i+elqkkek+++e
  XP_010091613.1  85 SESHFQGNWTVEYSRLTAKIELLQRNRSHFLGENLESLSQKDIQNLEQQLDTALKNIRARKiryitytetiftlqNQLMNETISELQKKEKAMRE 179
                     45555679****************************************************87777776666666689****************** PP

           K-box  90 enkaLrkklee 100
                     +n+ L+kk++e
  XP_010091613.1 180 QNNVLEKKIKE 190
                     ********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.464161IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-41160IPR002100Transcription factor, MADS-box
CDDcd002652.79E-43279No hitNo description
SuperFamilySSF554556.15E-35289IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-313859IPR002100Transcription factor, MADS-box
PfamPF014864.7E-2386188IPR002487Transcription factor, K-box
PROSITE profilePS5129713.4590194IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRNGLLK KAHEISVLCD AEVAVIVFSH KGKLFEYSTD  60
SCMEKILERY ERYSYAERQL VTMDSESHFQ GNWTVEYSRL TAKIELLQRN RSHFLGENLE  120
SLSQKDIQNL EQQLDTALKN IRARKIRYIT YTETIFTLQN QLMNETISEL QKKEKAMREQ  180
NNVLEKKIKE KEKSVAVEAQ QMQWEQQHHG ASTSSYLLPQ PLPCLNIGGT YNGEEAPEMR  240
RNDLELTLEP LYSCHLGCFA A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-21174173MEF2 CHIMERA
6byy_B4e-21174173MEF2 CHIMERA
6byy_C4e-21174173MEF2 CHIMERA
6byy_D4e-21174173MEF2 CHIMERA
6bz1_A4e-21174173MEF2 CHIMERA
6bz1_B4e-21174173MEF2 CHIMERA
6bz1_C4e-21174173MEF2 CHIMERA
6bz1_D4e-21174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010091613.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ5061531e-162KJ506153.1 Ficus carica MADS-box protein (MADS2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024018304.11e-174truncated transcription factor CAULIFLOWER A isoform X2
SwissprotQ6E6S71e-132AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLW9QYY00.0W9QYY0_9ROSA; Floral homeotic protein APETALA 1
STRINGXP_010091613.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-115MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]