PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010091612.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MIKC_MADS
Protein Properties Length: 268aa    MW: 30255.4 Da    PI: 8.1007
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010091612.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.98.6e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdaev +iifs++gklye++s
  XP_010091612.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVGLIIFSNRGKLYEFCS 59
                    79***********************************************96 PP
2SRF-TF60.52e-1962961751
                    HHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF 17 rngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rng+lKKA+ELSvLCdaev +iifs++gklye++s
  XP_010091612.1 62 RNGLLKKAYELSVLCDAEVGLIIFSNRGKLYEFCS 96
                    89*******************************96 PP
3K-box77.33.8e-26117201691
           K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                     gk +  ++++s++qe+ +Lk+++e L+r+qRhllGedLe+L lkeL qLe++L+ slk+iRs+K+e lle  +elq+k +++  ++
  XP_010091612.1 117 GK-QPGKDSQSSYQEYLRLKAKVEVLRRTQRHLLGEDLEQLGLKELGQLETKLDMSLKQIRSTKEESLLEANNELQRKLEAMGANE 201
                     44.4667799********************************************************************99876655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.8E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.842161IPR002100Transcription factor, MADS-box
CDDcd002653.62E-39268No hitNo description
SuperFamilySSF554555.36E-29260IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-323859IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-1962114IPR002100Transcription factor, MADS-box
SMARTSM004326.9E-106297IPR002100Transcription factor, MADS-box
PfamPF003193.8E-156294IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.1246298IPR002100Transcription factor, MADS-box
PfamPF014865.8E-20122197IPR002487Transcription factor, K-box
PROSITE profilePS5129713.24124219IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVGLIIFSN RGKLYEFCSG  60
PRNGLLKKAY ELSVLCDAEV GLIIFSNRGK LYEFCSGPSM AKTIERYESY SYGAQEGKQP  120
GKDSQSSYQE YLRLKAKVEV LRRTQRHLLG EDLEQLGLKE LGQLETKLDM SLKQIRSTKE  180
ESLLEANNEL QRKLEAMGAN EAREHNNIAY THHQSQPMAF SFEPLPCNNN ALQIGNYSLN  240
SSVREEVNVE GGTVQNLMAS SLDGCFDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-19173173MEF2 CHIMERA
6byy_B2e-19173173MEF2 CHIMERA
6byy_C2e-19173173MEF2 CHIMERA
6byy_D2e-19173173MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010091612.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ5061591e-115KJ506159.1 Ficus carica MADS-box protein (MADS8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024018306.11e-158truncated transcription factor CAULIFLOWER D isoform X2
SwissprotQ396854e-69CMB1_DIACA; MADS-box protein CMB1
TrEMBLW9QWB20.0W9QWB2_9ROSA; MADS-box protein
STRINGXP_010091612.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.26e-55MIKC_MADS family protein