PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010091413.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family SBP
Protein Properties Length: 1026aa    MW: 113088 Da    PI: 6.4613
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010091413.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.11.7e-40172249178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +Cqve+C adls+ak+yhrrhkvCe+hska ++lv ++ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  XP_010091413.1 172 VCQVEDCGADLSSAKDYHRRHKVCEMHSKACKALVGNVLQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 249
                     6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.7E-32165234IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.958170247IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-37171252IPR004333Transcription factor, SBP-box
PfamPF031106.2E-29173246IPR004333Transcription factor, SBP-box
CDDcd002041.07E-5770913No hitNo description
SuperFamilySSF484031.61E-5797913IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.0E-5799913IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1026 aa     Download sequence    Send to blast
MEARFGGEAH HFYGMSTADL PKRANLEWDL NHWKWDGDLF IASSVVNPVV GVGVGPSSHA  60
MASSSSRQFF PLGSGAGGSS NSSSSCSEGG NLGMIEKGKR ELMVEKRRRV NVVEEEDNLN  120
DGDEAGTLTL KLGGGGRVYN QTSEREVGVN NWEGTSGKKT KLAAGGSSSR AVCQVEDCGA  180
DLSSAKDYHR RHKVCEMHSK ACKALVGNVL QRFCQQCSRF HVLQEFDEGK RSCRRRLAGH  240
NKRRRKTNPD PVVNGSSLND DQTSGYLLIS LLRILSNMHS NRSDQSHQTT DQDLLSHLLR  300
SLASQTSDHG GKNIAGLLQE PQKLLNEGTS VGNSDVVSTF IANSSQGPPR PIKQHQTVSV  360
SEIPQQGVHL HNANGGSIQA TSSIKPSILN SPPSYSEARD GTAGQIKMNN FDLNDIYIDS  420
DDSVEDPERS PPTTNAVTSS LDCPSWVQQD SHQSSPPQTS GNSDSASAQS PSSSSGEAQS  480
RTDRIVFKLF GKEPNDFPLV LRAQILDWLS HSPSEIESYI RPGCIILTIY LRQSETAWEE  540
LCDDLSSSLS RLLDVSDDSF WRSGWIFIRA QHQIAFIYNG QVVVDTSLPL RSSNYSKIVS  600
VEPIAVPASE RAQFSVRGIN LVRPTTRLFC ALEGKYLVQE ATHELMESVD NVEHDEQCIN  660
FSCPIPVTNG RGFIEIEDQG LGSSFFPFIV AEEDVCSEIR VLESSLEHGR TGKPDTYNQA  720
VDFIHEMGWL LHRSQLRSRL GHLDPNADPF PLKRFKWIME FSMDHDWSAV VRKLLDILHD  780
GNVGAGDDHS ISLALSEMGL LHRAVRRNSR PLVEVLLKYV PKNLSNNSES EDKAVSNEVN  840
KGFLFRPDVI GPASLTPLHI AAGKDGSEDV LDALTNDPGM VGIEAWKSAH DSTGSTPEDY  900
ARLRGHYSYI RLIQRKINKR PASGHVVVDI PSNLNDCSTS QKQNEPVSSF QIGRTELRRN  960
QHPCRLCDRK LVYGTTSSSV VYRPAMLSMV AIAAVCVCVA LLFKSSPEVL YVFQPFRWER  1020
LEYGTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-30166246484squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105109KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010091413.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010091413.10.0squamosa promoter-binding-like protein 1
RefseqXP_024018150.10.0squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLW9QN820.0W9QN82_9ROSA; Squamosa promoter-binding-like protein 1
STRINGXP_010091413.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15393495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]