PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010090889.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family HD-ZIP
Protein Properties Length: 219aa    MW: 25604.6 Da    PI: 7.2003
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010090889.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.46.9e-202478256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     + ++f++eq++ Le++Fe++ ++  +++ +LA++lgL+ rqV +WFqNrRa++k
  XP_010090889.1 24 NHQRRFSDEQIRLLESMFESETKLEPRKKVQLARELGLQPRQVAIWFQNRRARWK 78
                    56789*************************************************9 PP
2HD-ZIP_I/II124.26.1e-4025116293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ++rr+s+eq++lLE++Fe+e+kLep++Kv+lareLglqprqva+WFqnrRAR+k+kq+E+d+++L+++y++l+++ e+L++e+++L  +l++
  XP_010090889.1  25 HQRRFSDEQIRLLESMFESETKLEPRKKVQLARELGLQPRQVAIWFQNRRARWKSKQIEQDFTTLRAQYESLASQFESLKQEKQSLILQLEK 116
                     68************************************************************************************988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.9772080IPR001356Homeobox domain
SuperFamilySSF466899.41E-192190IPR009057Homeodomain-like
SMARTSM003893.7E-172384IPR001356Homeobox domain
CDDcd000862.83E-152381No hitNo description
PfamPF000463.4E-172478IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-202686IPR009057Homeodomain-like
PRINTSPR000314.0E-65160IPR000047Helix-turn-helix motif
PROSITE patternPS0002705578IPR017970Homeobox, conserved site
PRINTSPR000314.0E-66076IPR000047Helix-turn-helix motif
PfamPF021831.2E-1480121IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MEREDYSQVS KKKRSNKNNN MDRNHQRRFS DEQIRLLESM FESETKLEPR KKVQLARELG  60
LQPRQVAIWF QNRRARWKSK QIEQDFTTLR AQYESLASQF ESLKQEKQSL ILQLEKLNEL  120
LGSSSTCGNV TNSKSEVKDS FLQEGLENDI GAMQLQPRDD NTNKNVGELK QEGIGSYELQ  180
NTIQELGDRA SLGSLETWCR SFDVFDQPRG CSQWLNFWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17280RRARWKSKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010090889.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010090889.11e-159homeobox-leucine zipper protein ATHB-12
TrEMBLW9QLX91e-158W9QLX9_9ROSA; Homeobox-leucine zipper protein ATHB-7
STRINGXP_010090889.11e-159(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56353452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.21e-43homeobox 7