PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010090819.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | NF-YB | ||||||||
Protein Properties | Length: 203aa MW: 23323.3 Da PI: 7.406 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 176.3 | 2.9e-55 | 13 | 108 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +eqdrflPianv+rimkk++P+n+kiskdake+vqecvsefisfvt+easdkcqrekrktingdd++wa++ lGfe+yv+plkvyl+kyre+ege XP_010090819.1 13 KEQDRFLPIANVGRIMKKMIPGNGKISKDAKESVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITALGFEHYVNPLKVYLEKYREIEGE 107 89*******************************************************************************************99 PP NF-YB 97 k 97 k XP_010090819.1 108 K 108 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.2E-52 | 11 | 148 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.38E-40 | 15 | 137 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.2E-28 | 18 | 82 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.3E-19 | 46 | 64 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 49 | 65 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.3E-19 | 65 | 83 | No hit | No description |
PRINTS | PR00615 | 1.3E-19 | 84 | 102 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MESRSPLSLK TNKEQDRFLP IANVGRIMKK MIPGNGKISK DAKESVQECV SEFISFVTGE 60 ASDKCQREKR KTINGDDIIW AITALGFEHY VNPLKVYLEK YREIEGEKLN NVPKQQRATD 120 YHHHHHHHQQ IRVQQHHNAQ LEVNDQEQQQ ISHVLNFDNL YSPTSLMTQS TPFLAADQAA 180 FSGLLPAFSP NLIRKQLQPQ DVD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 8e-45 | 13 | 103 | 2 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 8e-45 | 13 | 103 | 2 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010090819.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010090819.1 | 1e-152 | nuclear transcription factor Y subunit B-3 | ||||
Swissprot | Q9SIT9 | 1e-64 | NFYB7_ARATH; Nuclear transcription factor Y subunit B-7 | ||||
TrEMBL | W9QLR9 | 1e-151 | W9QLR9_9ROSA; Nuclear transcription factor Y subunit B-7 | ||||
STRING | XP_010090819.1 | 1e-152 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13249 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G13570.1 | 5e-65 | nuclear factor Y, subunit B7 |
Link Out ? help Back to Top | |
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Entrez Gene | 21403565 |
Publications ? help Back to Top | |||
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