PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010090392.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family bHLH
Protein Properties Length: 698aa    MW: 77421.6 Da    PI: 4.8545
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010090392.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.2e-12485531455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h  +ErrRR+++N++   Lr+l+P       +K++Ka+iL  ++eY+k+L+
  XP_010090392.1 485 NHVLAERRRREKLNERVIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 531
                     7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.1E-5125202IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.06481530IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-18482545IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.65E-14485535No hitNo description
PfamPF000102.9E-10485530IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-17485544IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-15487536IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MPSEEGLVGN SDQLVRMAAL PSGRLHSMLQ TAVQSVQWTY SLFWQICPQK GILVWSDGYY  60
NGAIKTRKTV QPMEVSTEEA SLQRSQQLRE LYDSLSIGET NQPARRPCAA LSPEDLTESE  120
WFYLMCVSFS FPPGVGLPGK AYEERQHVWL TGANEVESKI FSRAILAKTV VCIPLLDGVV  180
EFGTTDRVEE DLGFIKHVKT FFVVDHQNPP PPKPALSEHS TSNPATSSDI PGPVYVGSED  240
PPADANQEVD DEEADDEEAD PDSEAEMEHN GRPLSAQNLP VEAAEPSELM QLEMLEDIRL  300
GSPDDGSNNL NSDFHLLAVS QPRSPGELPR QLDSSCRAES TRRWPLQPDP SCSGLPVLPS  360
GPSLLPLEDL SSQEDTRYSE TVSTILQKHP SLWSESSDDH VTYSTQSAFA KWTSHSDHYL  420
HESSSEDTSQ WLLKYILFSV PFLHTKYRDE NSPKSRDGDG PGGADAASRL RKGGGGAPQD  480
DLSANHVLAE RRRREKLNER VIILRSLVPF VTKMDKASIL GDTIEYVKQL RKRIQDLEAR  540
IRQTDVDQRS NFGGDPQRTS STGSLKEVRS RLTMVDHTRV SPIGSDKRKL RIVEGSCGGA  600
KPKTVESPSP METSVQVSII ESEGLLELQC PHKEGLLLEV MQMLRELRIE TTTVQSSLNN  660
DFFVAELRAK VKGYVNGKKA SIVEVKRAIN QIIPHSDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-182420212192Transcription factor MYC3
4rqw_B1e-182420212192Transcription factor MYC3
4rru_A3e-182419051219Transcription factor MYC3
4rs9_A1e-182420212192Transcription factor MYC3
4ywc_A3e-182419051219Transcription factor MYC3
4ywc_B3e-182419051219Transcription factor MYC3
4yz6_A1e-182420212192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1489494ERRRRE
2490495RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010090392.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024017341.10.0basic helix-loop-helix protein A isoform X2
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLW9QT590.0W9QT59_9ROSA; Uncharacterized protein
STRINGXP_010090392.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.12e-92bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]