PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010090274.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | GeBP | ||||||||
Protein Properties | Length: 364aa MW: 40855.3 Da PI: 4.9123 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 77.1 | 3e-24 | 100 | 203 | 4 | 97 |
DUF573 4 qrlwseeDeivlLqGlidfkaktgk.....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.....aksgkepsfskehdqki 88 +r+w++eDe+ lL G++d +k+ +++d ++ f++ vk +++++++ksq+v+K+rrLK+K++++ ++ + ++++ f+++hd+ + XP_010090274.1 100 KRVWTKEDELELLHGFLDHMTKRRRitssrKQKDYVSSFCNEVKPELQIRFNKSQIVDKLRRLKRKYNQNIANkrslsLDMQDQFWFKNPHDKAA 194 8******************8887766654334446789*******************************9988777777889999********** PP DUF573 89 felskkiWg 97 fe+s+ iW+ XP_010090274.1 195 FEISHEIWN 203 ********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.3E-21 | 100 | 203 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MEMAWPLVSW IMSASSSSSS SSSEYDDNND DSDYNDDDNE AESPNDDVSC DDSVSPSTQS 60 PCQPPSSTVA AAVAADPSSS TSKRRRTDDS GEAVKRVSKK RVWTKEDELE LLHGFLDHMT 120 KRRRITSSRK QKDYVSSFCN EVKPELQIRF NKSQIVDKLR RLKRKYNQNI ANKRSLSLDM 180 QDQFWFKNPH DKAAFEISHE IWNTTDRLGT GDQDQTVVDD NVPIRTRSQT LRNSTTKGVL 240 DDGSWLNKIN NSNNSCGDEG SDTVGLIMGL GLSPIGLMKF GDGGEVVNFH DEKWGEQQIM 300 ELEVYLKRLE LVQAQVKAAL DKLRSAGSGK DVTLFAKAFY TDDVAAMETK RLFFFVVFQL 360 EGGL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 120 | 124 | KRRRI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010090274.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010090274.1 | 0.0 | probable transcription factor At3g04930 | ||||
TrEMBL | W9QKH7 | 0.0 | W9QKH7_9ROSA; Uncharacterized protein | ||||
STRING | XP_010090274.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3255 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28040.1 | 4e-32 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Entrez Gene | 21389620 |