PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010090273.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

GeBP

Protein Properties

Length: 405aa MW: 44352.9 Da PI: 4.5612

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010090273.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	118.4	3.8e-37	112	211	1	97
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgk...spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 klfqrlw++eDei lLqG++d++a++gk + ++d+ fy+++k++++++++k+qlveK+rrLKkK+++ +k++sgke+sf+++hdq +fe+s XP_010090273.1 112 KLFQRLWTDEDEIELLQGFLDYTAQRGKtthHGQNDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVLNKISSGKEFSFKSPHDQATFEIS 206 579***********************5433345******************************************************** PP DUF573 93 kkiWg 97 +kiW XP_010090273.1 207 RKIWS 211 **6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	5.1E-35	114	211	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MASHRDDVVL PGEDLSSSSS QDEDEDDVVD DDEDDDEELE NDNDDVALPS TSSAAPNTVT 60 VALPAPPKAE PPAILAISVI ADPSSDRHRN DVVLAAQPEE KKPPATLDDS RKLFQRLWTD 120 EDEIELLQGF LDYTAQRGKT THHGQNDTAL FYDQIKSKLQ LDFNKNQLVE KLRRLKKKYR 180 NVLNKISSGK EFSFKSPHDQ ATFEISRKIW SNIGAIASVA DDNALEDDDA NPNSTANFAV 240 EVKGEDAGAF SGEKKTPPRS RKRSRLKSDP RTDDRRCFSD GPAAMKDNCN NNSGGTGNNH 300 SNGNNVQGVI EETVRSCLSP LLKELLGNAM GGPCAAATRG FGGLALNPIP LNFSVPAMNL 360 GIGEVGDERW RKQQILELEV YSKRLELVQD QIKAALDELR SRGGS

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MASHRDDVVL PGEDLSSSSS QDEDEDDVVD DDEDDDEELE NDNDDVALPS TSSAAPNTVT  60
VALPAPPKAE PPAILAISVI ADPSSDRHRN DVVLAAQPEE KKPPATLDDS RKLFQRLWTD  120
EDEIELLQGF LDYTAQRGKT THHGQNDTAL FYDQIKSKLQ LDFNKNQLVE KLRRLKKKYR  180
NVLNKISSGK EFSFKSPHDQ ATFEISRKIW SNIGAIASVA DDNALEDDDA NPNSTANFAV  240
EVKGEDAGAF SGEKKTPPRS RKRSRLKSDP RTDDRRCFSD GPAAMKDNCN NNSGGTGNNH  300
SNGNNVQGVI EETVRSCLSP LLKELLGNAM GGPCAAATRG FGGLALNPIP LNFSVPAMNL  360
GIGEVGDERW RKQQILELEV YSKRLELVQD QIKAALDELR SRGGS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010090273.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010090273.1	0.0	probable transcription factor At5g28040
Swissprot	F4K5T4	3e-98	STKLU_ARATH; Probable transcription factor At5g28040
TrEMBL	W9QKD4	0.0	W9QKD4_9ROSA; Uncharacterized protein
STRING	XP_010090273.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3255	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	2e-81	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Entrez Gene	21389619

Publications ? help Back to Top
García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes. Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586 [PMID:29264953]