PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010090245.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | B3 | ||||||||
Protein Properties | Length: 117aa MW: 13366.2 Da PI: 10.7218 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.9 | 6.5e-17 | 3 | 103 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy.rkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f k lt+ dv ++ l++p++f++e+ +++ + ++l +++++g W+++++ r +s+r v ++GW +Fv++ +L++gD + ++ +g+ e++ XP_010090245.1 3 FTKSLTQTDVESK--LMVPNEFFREFpPSQNGGAVDLLVRNQNGLMWTFRMSSiRAGSNRskLVVSAGWLSFVRDRKLQSGDCLSIYKEGSGERT 95 8899999999987..89*********977778999****************7775555555699***********************88888888 PP .EEEEE-S CS B3 92 lvvkvfrk 99 +++ v r+ XP_010090245.1 96 YRIEVKRR 103 99888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.492 | 1 | 104 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.71E-16 | 2 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-18 | 2 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.8E-13 | 3 | 103 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.39E-17 | 3 | 102 | No hit | No description |
SMART | SM01019 | 3.7E-11 | 3 | 104 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MVFTKSLTQT DVESKLMVPN EFFREFPPSQ NGGAVDLLVR NQNGLMWTFR MSSIRAGSNR 60 SKLVVSAGWL SFVRDRKLQS GDCLSIYKEG SGERTYRIEV KRRERGKGSD GEWTRLV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010090245.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010090245.1 | 3e-81 | B3 domain-containing transcription factor NGA4 | ||||
TrEMBL | W9R6P2 | 6e-80 | W9R6P2_9ROSA; B3 domain-containing transcription factor NGA4 | ||||
STRING | XP_010090245.1 | 1e-80 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2060 | 7 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 2e-10 | B3 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21399627 |