PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010090051.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

LBD

Protein Properties

Length: 277aa MW: 30826.7 Da PI: 7.8769

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010090051.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	112.8	2.3e-35	10	108	2	100
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 Ca Ck++r++C ++C +apyfp+++ k+f+n+h+lFGasnv+k+++++++ +++d+++sl+ e++ar +dPv+G++g+i+ l++qle +++ela+ XP_010090051.1 10 CACCKLQRKNCDQQCEFAPYFPSTRFKEFQNAHRLFGASNVQKIMASVKPGQKKDTADSLLAEGNARRSDPVHGCYGIIRGLESQLEFAEKELAA 104 **********************************************************************************************9 PP DUF260 97 lkee 100 ++++ XP_010090051.1 105 VNRH 108 9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.933	8	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.3E-33	10	106	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MALSSEHQTC ACCKLQRKNC DQQCEFAPYF PSTRFKEFQN AHRLFGASNV QKIMASVKPG 60 QKKDTADSLL AEGNARRSDP VHGCYGIIRG LESQLEFAEK ELAAVNRHLA LYRERVIWKH 120 KRRTQAAGME QLMILRGRGG GGNGLNNPVR ASPVLTISPP PMAYAPVRDD HQQQDHHDRQ 180 MLDGVQFPRA IDLNTEAHDG YVYQSTLEEG SALSPFDLQR IDQMVASLQQ GNILGSLDEI 240 RDQFSASFKE NGKRNIVGKE KVEEAGSSAK GNEFVGN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-24	10	112	12	114	LOB family transfactor Ramosa2.1
5ly0_B	6e-24	10	112	12	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010090051.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	W9QS62	0.0	W9QS62_9ROSA; Uncharacterized protein
STRING	XP_010090051.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14432	11	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-33	LOB domain-containing protein 22

Link Out ? help Back to Top
Entrez Gene	21409905