PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010089952.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 674aa MW: 74487.7 Da PI: 6.0699 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.8 | 2.5e-28 | 206 | 259 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ Lt+e+v+SHLQkYRl XP_010089952.1 206 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVEKLTRENVASHLQKYRL 259 79*******************.********************************8 PP | |||||||
2 | Response_reg | 76.3 | 1.1e-25 | 20 | 128 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl vdD+p+ + ll+++l++ +y +v++++++ al++l+e + +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+g+ ++ + + G XP_010089952.1 20 VLAVDDDPTCLLLLETLLRRCQY-HVTTTSQAITALNMLREDKnrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDTRLVMKGITHG 112 799********************.***************887778*******************87754.558********************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ +eel + XP_010089952.1 113 ACDYLLKPIRIEELKN 128 *************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 9.5E-168 | 1 | 670 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 1.5E-41 | 17 | 151 | No hit | No description |
SuperFamily | SSF52172 | 1.22E-35 | 17 | 142 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 4.6E-31 | 18 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.727 | 19 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 5.1E-23 | 20 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 5.72E-23 | 21 | 134 | No hit | No description |
SuperFamily | SSF46689 | 7.7E-20 | 203 | 263 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.269 | 203 | 262 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-30 | 204 | 264 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.8E-25 | 206 | 259 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-6 | 208 | 258 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 674 aa Download sequence Send to blast |
MTVEQRNDDP RDQFPIGMRV LAVDDDPTCL LLLETLLRRC QYHVTTTSQA ITALNMLRED 60 KNRFDLVISD VHMPDMDGFK LLELVGLEMD LPVIMLSANG DTRLVMKGIT HGACDYLLKP 120 IRIEELKNIW QHVIRRKKFD STNQKTSGNQ DRSNDGGGEG ELVSAGTGNS DHSGKVNKKR 180 KDQNEDDDED PDENGHDNDD PSTQKKPRVV WSVELHRKFV AAVNQLGIDK AVPKKILDLM 240 NVEKLTRENV ASHLQKYRLY LKRISCVANQ QANMVVALSS SDSSYLHMNS MNGLGNFNPL 300 TGSMQFQNPA FRSFPPGGMI GRLNTPSGLG LRGLPSSGMI QLGHAQTSGN SNNQVKFQPV 360 TLQGNNNGSI LPGIPMPYEL DQQRNKGLHI GDLSTTIDDT AVFPLSNSLP DVKIATGNGS 420 NNVISVTNNM LMLGHCQDAQ AGREFGNHSS VSVAPLKPEF CSPLQDPGRC NENWANSVQP 480 SGFQSNSFPL NDRQKHAALH RSSSRDNMSV MASQIGVNQF DASSIASASF RPDNSLSDSQ 540 SSMIQGWGNL HKQDSSCRPN LMSSSMNSLV PVNGGLGPLE QGLDLKNPMY HRNMDFDSMG 600 QPNYVDPLMV KYEEVEKSTM ETLKLKQAYL MDQQRPQGSY MSNNFDPLGD VVSAMMKQEQ 660 DKAEGEFDAY PLRV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-26 | 202 | 265 | 1 | 64 | ARR10-B |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010089952.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010089952.1 | 0.0 | two-component response regulator ARR12 isoform X1 | ||||
TrEMBL | W9QUF0 | 0.0 | W9QUF0_9ROSA; Two-component response regulator | ||||
STRING | XP_010089952.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF956 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-126 | response regulator 12 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 21397602 |